Hb_002311_260

Information

Type -
Description -
Location Contig2311: 132653-134861
Sequence    

Annotation

kegg
ID rcu:RCOM_0682900
description nucleotide binding protein, putative
nr
ID XP_012084002.1
description PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K6G9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18935 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24317: 132851-133191
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002311_260 0.0 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
2 Hb_060658_010 0.1912181432 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH1 [Manihot esculenta]
3 Hb_182651_020 0.1927307579 - - alcohol dehydrogenase, putative [Ricinus communis]
4 Hb_000019_010 0.1942597614 - - PREDICTED: long chain base biosynthesis protein 2a [Jatropha curcas]
5 Hb_003938_110 0.1994599638 - - polyprotein [Ananas comosus]
6 Hb_001737_040 0.1995705563 - - PREDICTED: uncharacterized protein LOC104100193 [Nicotiana tomentosiformis]
7 Hb_000366_030 0.2016944435 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Jatropha curcas]
8 Hb_001080_150 0.2041941068 - - PREDICTED: Niemann-Pick C1 protein-like [Jatropha curcas]
9 Hb_002888_050 0.2101608297 - - PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]
10 Hb_062013_010 0.2137946907 - - phosphoprotein phosphatase, putative [Ricinus communis]
11 Hb_000414_180 0.215249814 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Vitis vinifera]
12 Hb_002518_180 0.2156231111 - - hypothetical protein POPTR_0001s25460g [Populus trichocarpa]
13 Hb_040473_010 0.2162505496 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
14 Hb_000875_070 0.2168345419 - - -
15 Hb_001195_370 0.2189221435 - - -
16 Hb_000997_320 0.225967905 - - PREDICTED: acylamino-acid-releasing enzyme-like [Malus domestica]
17 Hb_001677_230 0.2260844039 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
18 Hb_030312_030 0.2307446309 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
19 Hb_001054_060 0.23117469 - - PREDICTED: dihydropyrimidine dehydrogenase [NADP(+)] [Jatropha curcas]
20 Hb_004021_020 0.2313447028 - - PREDICTED: transposon Tf2-1 polyprotein isoform X1 [Zea mays]

Gene co-expression network

sample Hb_002311_260 Hb_002311_260 Hb_060658_010 Hb_060658_010 Hb_002311_260--Hb_060658_010 Hb_182651_020 Hb_182651_020 Hb_002311_260--Hb_182651_020 Hb_000019_010 Hb_000019_010 Hb_002311_260--Hb_000019_010 Hb_003938_110 Hb_003938_110 Hb_002311_260--Hb_003938_110 Hb_001737_040 Hb_001737_040 Hb_002311_260--Hb_001737_040 Hb_000366_030 Hb_000366_030 Hb_002311_260--Hb_000366_030 Hb_000574_250 Hb_000574_250 Hb_060658_010--Hb_000574_250 Hb_000414_180 Hb_000414_180 Hb_060658_010--Hb_000414_180 Hb_000454_160 Hb_000454_160 Hb_060658_010--Hb_000454_160 Hb_060658_010--Hb_003938_110 Hb_069147_010 Hb_069147_010 Hb_060658_010--Hb_069147_010 Hb_006483_120 Hb_006483_120 Hb_182651_020--Hb_006483_120 Hb_062013_010 Hb_062013_010 Hb_182651_020--Hb_062013_010 Hb_182651_020--Hb_000366_030 Hb_001080_150 Hb_001080_150 Hb_182651_020--Hb_001080_150 Hb_000329_080 Hb_000329_080 Hb_182651_020--Hb_000329_080 Hb_001195_370 Hb_001195_370 Hb_182651_020--Hb_001195_370 Hb_029879_120 Hb_029879_120 Hb_000019_010--Hb_029879_120 Hb_011174_080 Hb_011174_080 Hb_000019_010--Hb_011174_080 Hb_003125_180 Hb_003125_180 Hb_000019_010--Hb_003125_180 Hb_001702_050 Hb_001702_050 Hb_000019_010--Hb_001702_050 Hb_001235_130 Hb_001235_130 Hb_000019_010--Hb_001235_130 Hb_003490_050 Hb_003490_050 Hb_000019_010--Hb_003490_050 Hb_000875_070 Hb_000875_070 Hb_003938_110--Hb_000875_070 Hb_008511_140 Hb_008511_140 Hb_003938_110--Hb_008511_140 Hb_012404_080 Hb_012404_080 Hb_003938_110--Hb_012404_080 Hb_009296_050 Hb_009296_050 Hb_003938_110--Hb_009296_050 Hb_044380_020 Hb_044380_020 Hb_003938_110--Hb_044380_020 Hb_001971_050 Hb_001971_050 Hb_001737_040--Hb_001971_050 Hb_000714_120 Hb_000714_120 Hb_001737_040--Hb_000714_120 Hb_002888_050 Hb_002888_050 Hb_001737_040--Hb_002888_050 Hb_000392_490 Hb_000392_490 Hb_001737_040--Hb_000392_490 Hb_005332_050 Hb_005332_050 Hb_001737_040--Hb_005332_050 Hb_002110_090 Hb_002110_090 Hb_001737_040--Hb_002110_090 Hb_000366_030--Hb_001195_370 Hb_000757_020 Hb_000757_020 Hb_000366_030--Hb_000757_020 Hb_001969_130 Hb_001969_130 Hb_000366_030--Hb_001969_130 Hb_049293_010 Hb_049293_010 Hb_000366_030--Hb_049293_010 Hb_000731_290 Hb_000731_290 Hb_000366_030--Hb_000731_290 Hb_000366_030--Hb_011174_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.022318 0.406171 0.120862 0.934242 0.0209193 0.359509
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.102244 0.160828 0 1.05117 1.97308

CAGE analysis