Hb_002311_280

Information

Type -
Description -
Location Contig2311: 137686-141445
Sequence    

Annotation

kegg
ID rcu:RCOM_0682780
description Polygalacturonase, putative (EC:3.2.1.67)
nr
ID XP_012084001.1
description PREDICTED: probable polygalacturonase [Jatropha curcas]
swissprot
ID A7PZL3
description Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1
trembl
ID A0A067K7R1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18934 PE=3 SV=1
Gene Ontology
ID GO:0005576
description probable polygalacturonase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24318: 137693-141736 , PASA_asmbl_24320: 138265-141300
cDNA
(Sanger)
(ID:Location)		 026_F16.ab1: 141520-141725

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002311_280 0.0 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
2 Hb_007130_020 0.088916198 - - -
3 Hb_022092_110 0.0899108119 - - PREDICTED: probable protein phosphatase 2C 52 [Jatropha curcas]
4 Hb_003266_090 0.092448301 - - PREDICTED: basic 7S globulin 2-like [Jatropha curcas]
5 Hb_033006_020 0.0936906857 - - Aspartate aminotransferase, putative [Ricinus communis]
6 Hb_044653_050 0.0980384115 - - PREDICTED: CTL-like protein DDB_G0274487 isoform X1 [Jatropha curcas]
7 Hb_000181_330 0.1014749821 - - ubiquitin ligase protein cop1, putative [Ricinus communis]
8 Hb_028008_040 0.1020655421 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001054_040 0.1042930049 - - hypothetical protein JCGZ_25310 [Jatropha curcas]
10 Hb_000173_270 0.108360823 - - PREDICTED: mitogen-activated protein kinase 15 isoform X2 [Jatropha curcas]
11 Hb_001104_150 0.1122930725 - - PREDICTED: protein ROS1 [Jatropha curcas]
12 Hb_005568_020 0.1131115528 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
13 Hb_002078_390 0.1132602329 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 2 [Jatropha curcas]
14 Hb_001936_190 0.1141857038 - - hypothetical protein JCGZ_17780 [Jatropha curcas]
15 Hb_000465_020 0.1157109803 - - PREDICTED: uncharacterized protein LOC105632280 [Jatropha curcas]
16 Hb_000049_280 0.1176732151 - - PREDICTED: ribokinase-like isoform X4 [Jatropha curcas]
17 Hb_000272_030 0.1189387416 - - PREDICTED: WD repeat-containing protein 76 isoform X1 [Jatropha curcas]
18 Hb_000008_200 0.119135117 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
19 Hb_000836_090 0.1197834312 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
20 Hb_000417_050 0.1205749827 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1 [Jatropha curcas]

Gene co-expression network

sample Hb_002311_280 Hb_002311_280 Hb_007130_020 Hb_007130_020 Hb_002311_280--Hb_007130_020 Hb_022092_110 Hb_022092_110 Hb_002311_280--Hb_022092_110 Hb_003266_090 Hb_003266_090 Hb_002311_280--Hb_003266_090 Hb_033006_020 Hb_033006_020 Hb_002311_280--Hb_033006_020 Hb_044653_050 Hb_044653_050 Hb_002311_280--Hb_044653_050 Hb_000181_330 Hb_000181_330 Hb_002311_280--Hb_000181_330 Hb_007130_020--Hb_044653_050 Hb_000836_090 Hb_000836_090 Hb_007130_020--Hb_000836_090 Hb_006922_020 Hb_006922_020 Hb_007130_020--Hb_006922_020 Hb_007130_020--Hb_033006_020 Hb_004228_070 Hb_004228_070 Hb_007130_020--Hb_004228_070 Hb_001936_180 Hb_001936_180 Hb_022092_110--Hb_001936_180 Hb_001946_200 Hb_001946_200 Hb_022092_110--Hb_001946_200 Hb_001440_010 Hb_001440_010 Hb_022092_110--Hb_001440_010 Hb_000735_060 Hb_000735_060 Hb_022092_110--Hb_000735_060 Hb_000418_170 Hb_000418_170 Hb_022092_110--Hb_000418_170 Hb_003266_090--Hb_022092_110 Hb_001318_100 Hb_001318_100 Hb_003266_090--Hb_001318_100 Hb_003581_050 Hb_003581_050 Hb_003266_090--Hb_003581_050 Hb_002518_220 Hb_002518_220 Hb_003266_090--Hb_002518_220 Hb_003454_050 Hb_003454_050 Hb_003266_090--Hb_003454_050 Hb_033006_020--Hb_000836_090 Hb_000645_260 Hb_000645_260 Hb_033006_020--Hb_000645_260 Hb_001377_120 Hb_001377_120 Hb_033006_020--Hb_001377_120 Hb_000465_020 Hb_000465_020 Hb_033006_020--Hb_000465_020 Hb_007894_120 Hb_007894_120 Hb_044653_050--Hb_007894_120 Hb_017491_010 Hb_017491_010 Hb_044653_050--Hb_017491_010 Hb_044653_050--Hb_004228_070 Hb_005365_010 Hb_005365_010 Hb_044653_050--Hb_005365_010 Hb_001301_260 Hb_001301_260 Hb_044653_050--Hb_001301_260 Hb_000243_060 Hb_000243_060 Hb_000181_330--Hb_000243_060 Hb_000322_030 Hb_000322_030 Hb_000181_330--Hb_000322_030 Hb_000272_030 Hb_000272_030 Hb_000181_330--Hb_000272_030 Hb_004531_170 Hb_004531_170 Hb_000181_330--Hb_004531_170 Hb_000173_270 Hb_000173_270 Hb_000181_330--Hb_000173_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.474091 6.94295 16.2164 14.7421 0.200142 0.164126
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.338285 0.51332 0.467879 2.92895 11.6301

CAGE analysis