Hb_002311_290

Information

Type -
Description -
Location Contig2311: 144681-150780
Sequence    

Annotation

kegg
ID rcu:RCOM_0682660
description Protein penguin, putative
nr
ID XP_012084000.1
description PREDICTED: pumilio homolog 24 [Jatropha curcas]
swissprot
ID Q9LRZ3
description Pumilio homolog 24 OS=Arabidopsis thaliana GN=APUM24 PE=2 SV=1
trembl
ID A0A067JYJ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18933 PE=4 SV=1
Gene Ontology
ID GO:0006913
description pumilio homolog 24

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24321: 144860-147827 , PASA_asmbl_24322: 148283-150667 , PASA_asmbl_24323: 148324-148772
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002311_290 0.0 - - PREDICTED: pumilio homolog 24 [Jatropha curcas]
2 Hb_007657_020 0.0488065064 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
3 Hb_002681_090 0.0522075178 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
4 Hb_000603_030 0.0614154052 - - Ribonuclease III, putative [Ricinus communis]
5 Hb_001062_010 0.0636671781 - - PREDICTED: CWF19-like protein 2 [Jatropha curcas]
6 Hb_002631_170 0.0645424246 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 36 [Jatropha curcas]
7 Hb_000227_220 0.0672715224 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
8 Hb_004267_040 0.0683546779 - - PREDICTED: transcriptional adapter ADA2a [Jatropha curcas]
9 Hb_000261_240 0.0692523297 - - RecName: Full=Elongation factor 1-alpha; Short=EF-1-alpha [Manihot esculenta]
10 Hb_001235_140 0.0694215198 - - PREDICTED: protein arginine N-methyltransferase 1.6 [Jatropha curcas]
11 Hb_009486_180 0.0697817279 - - unknown [Glycine max]
12 Hb_000398_080 0.0709579389 - - tip120, putative [Ricinus communis]
13 Hb_002092_130 0.0742050444 - - PREDICTED: protein CASP-like [Oryza brachyantha]
14 Hb_009976_020 0.0771002695 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105631286 [Jatropha curcas]
15 Hb_000011_100 0.0773424501 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
16 Hb_001085_110 0.0782156105 - - T6D22.2 [Arabidopsis thaliana]
17 Hb_000563_130 0.0782789287 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
18 Hb_000089_120 0.0784385284 - - WD-repeat protein, putative [Ricinus communis]
19 Hb_000120_280 0.079130686 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
20 Hb_005588_090 0.0791681036 - - hypothetical protein CICLE_v10003480mg [Citrus clementina]

Gene co-expression network

sample Hb_002311_290 Hb_002311_290 Hb_007657_020 Hb_007657_020 Hb_002311_290--Hb_007657_020 Hb_002681_090 Hb_002681_090 Hb_002311_290--Hb_002681_090 Hb_000603_030 Hb_000603_030 Hb_002311_290--Hb_000603_030 Hb_001062_010 Hb_001062_010 Hb_002311_290--Hb_001062_010 Hb_002631_170 Hb_002631_170 Hb_002311_290--Hb_002631_170 Hb_000227_220 Hb_000227_220 Hb_002311_290--Hb_000227_220 Hb_000398_080 Hb_000398_080 Hb_007657_020--Hb_000398_080 Hb_007657_020--Hb_002681_090 Hb_000261_240 Hb_000261_240 Hb_007657_020--Hb_000261_240 Hb_007657_020--Hb_000603_030 Hb_000089_120 Hb_000089_120 Hb_007657_020--Hb_000089_120 Hb_002681_090--Hb_000603_030 Hb_000120_280 Hb_000120_280 Hb_002681_090--Hb_000120_280 Hb_002815_030 Hb_002815_030 Hb_002681_090--Hb_002815_030 Hb_000170_090 Hb_000170_090 Hb_002681_090--Hb_000170_090 Hb_000603_030--Hb_000398_080 Hb_028872_070 Hb_028872_070 Hb_000603_030--Hb_028872_070 Hb_000563_130 Hb_000563_130 Hb_000603_030--Hb_000563_130 Hb_004267_040 Hb_004267_040 Hb_000603_030--Hb_004267_040 Hb_000900_030 Hb_000900_030 Hb_001062_010--Hb_000900_030 Hb_009976_020 Hb_009976_020 Hb_001062_010--Hb_009976_020 Hb_001343_040 Hb_001343_040 Hb_001062_010--Hb_001343_040 Hb_001062_010--Hb_002815_030 Hb_009175_020 Hb_009175_020 Hb_001062_010--Hb_009175_020 Hb_009486_180 Hb_009486_180 Hb_002631_170--Hb_009486_180 Hb_002631_170--Hb_001062_010 Hb_001935_110 Hb_001935_110 Hb_002631_170--Hb_001935_110 Hb_002631_170--Hb_000603_030 Hb_002092_130 Hb_002092_130 Hb_002631_170--Hb_002092_130 Hb_000227_220--Hb_009976_020 Hb_001814_030 Hb_001814_030 Hb_000227_220--Hb_001814_030 Hb_000710_040 Hb_000710_040 Hb_000227_220--Hb_000710_040 Hb_003943_010 Hb_003943_010 Hb_000227_220--Hb_003943_010 Hb_001089_030 Hb_001089_030 Hb_000227_220--Hb_001089_030 Hb_004020_040 Hb_004020_040 Hb_000227_220--Hb_004020_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.67082 6.23347 5.38231 6.51163 8.48127 7.80795
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.94759 4.4761 2.84656 9.42794 6.24494

CAGE analysis