Hb_002311_320

Information

Type -
Description -
Location Contig2311: 161331-163255
Sequence    

Annotation

kegg
ID rcu:RCOM_0682620
description hypothetical protein
nr
ID XP_012083995.1
description PREDICTED: mediator of RNA polymerase II transcription subunit 20a [Jatropha curcas]
swissprot
ID Q6NPF4
description Mediator of RNA polymerase II transcription subunit 20a OS=Arabidopsis thaliana GN=MED20A PE=1 SV=1
trembl
ID A0A067K7Q8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18929 PE=4 SV=1
Gene Ontology
ID GO:0016592
description mediator of rna polymerase ii transcription subunit 20a-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24329: 161441-163130 , PASA_asmbl_24330: 161497-163186
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002311_320 0.0 - - PREDICTED: mediator of RNA polymerase II transcription subunit 20a [Jatropha curcas]
2 Hb_010883_150 0.0785184692 - - Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis]
3 Hb_000317_340 0.0843692665 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003086_100 0.0855187255 - - hypothetical protein JCGZ_08729 [Jatropha curcas]
5 Hb_000505_140 0.0882626358 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Populus euphratica]
6 Hb_000526_150 0.0891830907 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
7 Hb_002571_020 0.0926665968 - - PREDICTED: uncharacterized protein LOC105132457 isoform X12 [Populus euphratica]
8 Hb_000484_020 0.092790926 - - hypothetical protein CISIN_1g030884mg [Citrus sinensis]
9 Hb_010810_020 0.0947156543 - - PREDICTED: uncharacterized protein LOC105638766 [Jatropha curcas]
10 Hb_171900_050 0.0953990878 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001584_070 0.0954748222 - - conserved hypothetical protein [Ricinus communis]
12 Hb_032202_090 0.0956879096 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Jatropha curcas]
13 Hb_004117_290 0.0961178901 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000365_380 0.0972215597 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000545_150 0.0978339487 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
16 Hb_000086_550 0.0983010985 - - Os02g0814700 [Oryza sativa Japonica Group]
17 Hb_000840_190 0.0984272324 - - 60S ribosomal protein L10, mitochondrial, putative [Ricinus communis]
18 Hb_143629_230 0.0986606784 - - ring finger, putative [Ricinus communis]
19 Hb_000120_750 0.10107818 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
20 Hb_012515_010 0.1023010428 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]

Gene co-expression network

sample Hb_002311_320 Hb_002311_320 Hb_010883_150 Hb_010883_150 Hb_002311_320--Hb_010883_150 Hb_000317_340 Hb_000317_340 Hb_002311_320--Hb_000317_340 Hb_003086_100 Hb_003086_100 Hb_002311_320--Hb_003086_100 Hb_000505_140 Hb_000505_140 Hb_002311_320--Hb_000505_140 Hb_000526_150 Hb_000526_150 Hb_002311_320--Hb_000526_150 Hb_002571_020 Hb_002571_020 Hb_002311_320--Hb_002571_020 Hb_001584_070 Hb_001584_070 Hb_010883_150--Hb_001584_070 Hb_008847_020 Hb_008847_020 Hb_010883_150--Hb_008847_020 Hb_010883_150--Hb_000526_150 Hb_000840_190 Hb_000840_190 Hb_010883_150--Hb_000840_190 Hb_000061_330 Hb_000061_330 Hb_010883_150--Hb_000061_330 Hb_032202_090 Hb_032202_090 Hb_000317_340--Hb_032202_090 Hb_143629_230 Hb_143629_230 Hb_000317_340--Hb_143629_230 Hb_000365_380 Hb_000365_380 Hb_000317_340--Hb_000365_380 Hb_000545_150 Hb_000545_150 Hb_000317_340--Hb_000545_150 Hb_000465_060 Hb_000465_060 Hb_000317_340--Hb_000465_060 Hb_000120_750 Hb_000120_750 Hb_000317_340--Hb_000120_750 Hb_012265_010 Hb_012265_010 Hb_003086_100--Hb_012265_010 Hb_003376_130 Hb_003376_130 Hb_003086_100--Hb_003376_130 Hb_001433_050 Hb_001433_050 Hb_003086_100--Hb_001433_050 Hb_001383_060 Hb_001383_060 Hb_003086_100--Hb_001383_060 Hb_003086_100--Hb_010883_150 Hb_012022_120 Hb_012022_120 Hb_000505_140--Hb_012022_120 Hb_000000_170 Hb_000000_170 Hb_000505_140--Hb_000000_170 Hb_000505_140--Hb_032202_090 Hb_004502_020 Hb_004502_020 Hb_000505_140--Hb_004502_020 Hb_000086_550 Hb_000086_550 Hb_000505_140--Hb_000086_550 Hb_000926_300 Hb_000926_300 Hb_000505_140--Hb_000926_300 Hb_001269_270 Hb_001269_270 Hb_000526_150--Hb_001269_270 Hb_001638_260 Hb_001638_260 Hb_000526_150--Hb_001638_260 Hb_009851_100 Hb_009851_100 Hb_000526_150--Hb_009851_100 Hb_000526_150--Hb_000545_150 Hb_000634_050 Hb_000634_050 Hb_000526_150--Hb_000634_050 Hb_001818_020 Hb_001818_020 Hb_000526_150--Hb_001818_020 Hb_002571_020--Hb_009851_100 Hb_002571_020--Hb_000120_750 Hb_000484_020 Hb_000484_020 Hb_002571_020--Hb_000484_020 Hb_001045_080 Hb_001045_080 Hb_002571_020--Hb_001045_080 Hb_002571_020--Hb_003376_130 Hb_003125_150 Hb_003125_150 Hb_002571_020--Hb_003125_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.899 6.50423 14.7694 18.6254 37.0734 48.0761
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
89.0095 94.4336 26.5976 19.9964 10.5155

CAGE analysis