Hb_002311_330

Information

Type -
Description -
Location Contig2311: 163390-165470
Sequence    

Annotation

kegg
ID rcu:RCOM_0682610
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_002516975.1
description protein phosphatase 2c, putative [Ricinus communis]
swissprot
ID Q9M9W9
description Probable protein phosphatase 2C 34 OS=Arabidopsis thaliana GN=At3g05640 PE=2 SV=1
trembl
ID B9RTA6
description Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_0682610 PE=4 SV=1
Gene Ontology
ID GO:0005634
description probable protein phosphatase 2c 34

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24331: 163543-164033
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002311_330 0.0 - - protein phosphatase 2c, putative [Ricinus communis]
2 Hb_003994_300 0.174549489 - - conserved hypothetical protein [Ricinus communis]
3 Hb_122636_010 0.1749847483 - - dienelactone hydrolase family protein [Populus trichocarpa]
4 Hb_000177_110 0.1778450192 - - PREDICTED: uncharacterized protein LOC105642063 [Jatropha curcas]
5 Hb_001711_080 0.1839959662 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Phoenix dactylifera]
6 Hb_001894_070 0.1900856407 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X1 [Jatropha curcas]
7 Hb_006634_110 0.1926496793 - - BnaC04g40780D [Brassica napus]
8 Hb_000665_190 0.1988082739 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001004_080 0.2001807421 - - hypothetical protein POPTR_0014s14130g [Populus trichocarpa]
10 Hb_002129_020 0.2008314018 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX14 [Jatropha curcas]
11 Hb_027445_030 0.2040592714 - - F-box/LRR-repeat protein, putative [Ricinus communis]
12 Hb_000844_030 0.2059863066 - - ent-kaurene oxidase, putative [Ricinus communis]
13 Hb_000330_020 0.2064301372 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
14 Hb_000556_010 0.2064777918 - - glycerate dehydrogenase, putative [Ricinus communis]
15 Hb_004097_090 0.2071400758 - - PREDICTED: uncharacterized protein LOC105634517 [Jatropha curcas]
16 Hb_001140_170 0.209568813 - - PREDICTED: remorin [Jatropha curcas]
17 Hb_007477_050 0.2096232859 - - PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Jatropha curcas]
18 Hb_000445_150 0.2108366175 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
19 Hb_000671_130 0.2114794674 - - PREDICTED: CMP-sialic acid transporter 2 isoform X2 [Jatropha curcas]
20 Hb_000417_170 0.2116975562 - - PREDICTED: uncharacterized protein LOC105649689 [Jatropha curcas]

Gene co-expression network

sample Hb_002311_330 Hb_002311_330 Hb_003994_300 Hb_003994_300 Hb_002311_330--Hb_003994_300 Hb_122636_010 Hb_122636_010 Hb_002311_330--Hb_122636_010 Hb_000177_110 Hb_000177_110 Hb_002311_330--Hb_000177_110 Hb_001711_080 Hb_001711_080 Hb_002311_330--Hb_001711_080 Hb_001894_070 Hb_001894_070 Hb_002311_330--Hb_001894_070 Hb_006634_110 Hb_006634_110 Hb_002311_330--Hb_006634_110 Hb_000665_190 Hb_000665_190 Hb_003994_300--Hb_000665_190 Hb_027445_030 Hb_027445_030 Hb_003994_300--Hb_027445_030 Hb_007477_050 Hb_007477_050 Hb_003994_300--Hb_007477_050 Hb_003746_010 Hb_003746_010 Hb_003994_300--Hb_003746_010 Hb_001049_150 Hb_001049_150 Hb_003994_300--Hb_001049_150 Hb_000399_060 Hb_000399_060 Hb_003994_300--Hb_000399_060 Hb_122636_010--Hb_006634_110 Hb_000671_130 Hb_000671_130 Hb_122636_010--Hb_000671_130 Hb_002660_110 Hb_002660_110 Hb_122636_010--Hb_002660_110 Hb_003207_150 Hb_003207_150 Hb_122636_010--Hb_003207_150 Hb_001217_010 Hb_001217_010 Hb_122636_010--Hb_001217_010 Hb_100137_010 Hb_100137_010 Hb_122636_010--Hb_100137_010 Hb_000177_110--Hb_003207_150 Hb_034726_010 Hb_034726_010 Hb_000177_110--Hb_034726_010 Hb_000424_030 Hb_000424_030 Hb_000177_110--Hb_000424_030 Hb_007483_060 Hb_007483_060 Hb_000177_110--Hb_007483_060 Hb_002217_500 Hb_002217_500 Hb_000177_110--Hb_002217_500 Hb_000177_110--Hb_000671_130 Hb_005941_030 Hb_005941_030 Hb_001711_080--Hb_005941_030 Hb_004899_340 Hb_004899_340 Hb_001711_080--Hb_004899_340 Hb_001221_190 Hb_001221_190 Hb_001711_080--Hb_001221_190 Hb_009838_020 Hb_009838_020 Hb_001711_080--Hb_009838_020 Hb_025645_020 Hb_025645_020 Hb_001711_080--Hb_025645_020 Hb_014361_090 Hb_014361_090 Hb_001711_080--Hb_014361_090 Hb_000107_110 Hb_000107_110 Hb_001894_070--Hb_000107_110 Hb_091349_010 Hb_091349_010 Hb_001894_070--Hb_091349_010 Hb_010042_020 Hb_010042_020 Hb_001894_070--Hb_010042_020 Hb_001894_070--Hb_000671_130 Hb_004881_030 Hb_004881_030 Hb_001894_070--Hb_004881_030 Hb_003052_180 Hb_003052_180 Hb_001894_070--Hb_003052_180 Hb_048702_010 Hb_048702_010 Hb_006634_110--Hb_048702_010 Hb_006634_110--Hb_100137_010 Hb_010577_010 Hb_010577_010 Hb_006634_110--Hb_010577_010 Hb_053709_040 Hb_053709_040 Hb_006634_110--Hb_053709_040 Hb_006634_110--Hb_000671_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0429795 0.474203 0.398682 2.10372 0.262139 0.578844
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.26225 0.27504 0.191235 0.0413665 0.850742

CAGE analysis