Hb_002311_340

Information

Type -
Description -
Location Contig2311: 168005-179389
Sequence    

Annotation

kegg
ID rcu:RCOM_0682600
description phospholipase d zeta, putative (EC:3.1.4.4 1.3.1.74)
nr
ID XP_002516974.1
description phospholipase d zeta, putative [Ricinus communis]
swissprot
ID Q9LRZ5
description Phospholipase D p1 OS=Arabidopsis thaliana GN=PLDP1 PE=1 SV=1
trembl
ID B9RTA5
description Phospholipase d zeta, putative OS=Ricinus communis GN=RCOM_0682600 PE=4 SV=1
Gene Ontology
ID GO:0005622
description phospholipase d p1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002311_340 0.0 - - phospholipase d zeta, putative [Ricinus communis]
2 Hb_003847_030 0.1094565973 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Jatropha curcas]
3 Hb_000504_070 0.1098695122 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
4 Hb_028227_070 0.1160473949 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
5 Hb_109002_020 0.1162332401 - - PREDICTED: CTP synthase-like [Jatropha curcas]
6 Hb_001414_030 0.1189053018 - - PREDICTED: aspartate-semialdehyde dehydrogenase [Jatropha curcas]
7 Hb_142343_010 0.1202459647 - - ATP binding protein, putative [Ricinus communis]
8 Hb_001157_110 0.1220513316 - - PREDICTED: formate--tetrahydrofolate ligase [Populus euphratica]
9 Hb_000095_080 0.1257359176 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 7 [Jatropha curcas]
10 Hb_152371_010 0.1273388867 - - RNA-binding KH domain-containing protein [Theobroma cacao]
11 Hb_007044_050 0.1290996759 - - PREDICTED: putative endo-1,3(4)-beta-glucanase 2 [Jatropha curcas]
12 Hb_016522_010 0.1294229417 - - PREDICTED: short-chain dehydrogenase/reductase 2b-like [Jatropha curcas]
13 Hb_006452_100 0.1302069865 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
14 Hb_019654_030 0.1313946306 - - maoC-like dehydratase domain-containing family protein [Populus trichocarpa]
15 Hb_008770_040 0.1318549885 - - PREDICTED: MACPF domain-containing protein At4g24290-like [Malus domestica]
16 Hb_005306_180 0.1319102121 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
17 Hb_001268_410 0.1351128844 transcription factor TF Family: TCP PREDICTED: transcription factor TCP20 [Jatropha curcas]
18 Hb_002748_030 0.1358183985 - - nucleotide binding protein, putative [Ricinus communis]
19 Hb_003777_320 0.1360381545 - - PREDICTED: U3 small nucleolar RNA-associated protein 15 homolog [Jatropha curcas]
20 Hb_000327_180 0.1364935176 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002311_340 Hb_002311_340 Hb_003847_030 Hb_003847_030 Hb_002311_340--Hb_003847_030 Hb_000504_070 Hb_000504_070 Hb_002311_340--Hb_000504_070 Hb_028227_070 Hb_028227_070 Hb_002311_340--Hb_028227_070 Hb_109002_020 Hb_109002_020 Hb_002311_340--Hb_109002_020 Hb_001414_030 Hb_001414_030 Hb_002311_340--Hb_001414_030 Hb_142343_010 Hb_142343_010 Hb_002311_340--Hb_142343_010 Hb_000327_180 Hb_000327_180 Hb_003847_030--Hb_000327_180 Hb_000049_210 Hb_000049_210 Hb_003847_030--Hb_000049_210 Hb_000614_250 Hb_000614_250 Hb_003847_030--Hb_000614_250 Hb_005054_110 Hb_005054_110 Hb_003847_030--Hb_005054_110 Hb_000497_300 Hb_000497_300 Hb_003847_030--Hb_000497_300 Hb_001014_030 Hb_001014_030 Hb_003847_030--Hb_001014_030 Hb_000504_070--Hb_028227_070 Hb_007416_120 Hb_007416_120 Hb_000504_070--Hb_007416_120 Hb_002534_120 Hb_002534_120 Hb_000504_070--Hb_002534_120 Hb_006452_100 Hb_006452_100 Hb_000504_070--Hb_006452_100 Hb_005914_170 Hb_005914_170 Hb_000504_070--Hb_005914_170 Hb_000175_540 Hb_000175_540 Hb_000504_070--Hb_000175_540 Hb_002481_080 Hb_002481_080 Hb_028227_070--Hb_002481_080 Hb_001016_120 Hb_001016_120 Hb_028227_070--Hb_001016_120 Hb_010964_040 Hb_010964_040 Hb_028227_070--Hb_010964_040 Hb_001584_120 Hb_001584_120 Hb_028227_070--Hb_001584_120 Hb_155159_020 Hb_155159_020 Hb_028227_070--Hb_155159_020 Hb_109002_020--Hb_000175_540 Hb_109002_020--Hb_000504_070 Hb_004064_010 Hb_004064_010 Hb_109002_020--Hb_004064_010 Hb_000103_270 Hb_000103_270 Hb_109002_020--Hb_000103_270 Hb_000621_020 Hb_000621_020 Hb_109002_020--Hb_000621_020 Hb_003266_100 Hb_003266_100 Hb_109002_020--Hb_003266_100 Hb_000329_760 Hb_000329_760 Hb_001414_030--Hb_000329_760 Hb_016522_010 Hb_016522_010 Hb_001414_030--Hb_016522_010 Hb_000982_080 Hb_000982_080 Hb_001414_030--Hb_000982_080 Hb_034380_020 Hb_034380_020 Hb_001414_030--Hb_034380_020 Hb_001357_300 Hb_001357_300 Hb_001414_030--Hb_001357_300 Hb_011942_090 Hb_011942_090 Hb_001414_030--Hb_011942_090 Hb_152371_010 Hb_152371_010 Hb_142343_010--Hb_152371_010 Hb_163975_010 Hb_163975_010 Hb_142343_010--Hb_163975_010 Hb_138475_010 Hb_138475_010 Hb_142343_010--Hb_138475_010 Hb_000228_110 Hb_000228_110 Hb_142343_010--Hb_000228_110 Hb_002748_030 Hb_002748_030 Hb_142343_010--Hb_002748_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.267782 0.375813 0.248579 0.450131 0.0921393 0.587593
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.414563 0.583276 0.795952 0.936443 0.422833

CAGE analysis