Hb_002311_350

Information

Type -
Description -
Location Contig2311: 180257-183262
Sequence    

Annotation

kegg
ID rcu:RCOM_0682590
description 60S ribosomal protein L19, putative
nr
ID XP_012083992.1
description PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
swissprot
ID Q9LUQ6
description 60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1
trembl
ID A0A067JV55
description Ribosomal protein L19 OS=Jatropha curcas GN=JCGZ_18926 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24332: 180779-183229
cDNA
(Sanger)
(ID:Location)		 037_E02.ab1: 180899-183190

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002311_350 0.0 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
2 Hb_000380_190 0.0511772009 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
3 Hb_001477_110 0.0615603045 - - prohibitin, putative [Ricinus communis]
4 Hb_004645_050 0.068683074 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
5 Hb_000189_270 0.0727598379 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1 [Jatropha curcas]
6 Hb_005618_140 0.074958232 - - PREDICTED: uncharacterized protein LOC105642706 [Jatropha curcas]
7 Hb_001824_070 0.0752053973 - - H/ACA ribonucleoprotein complex subunit, putative [Ricinus communis]
8 Hb_000007_100 0.0760896211 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
9 Hb_172632_090 0.0775614317 - - ribosomal pseudouridine synthase, putative [Ricinus communis]
10 Hb_001235_210 0.0781186343 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
11 Hb_023732_070 0.0793666672 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
12 Hb_000251_130 0.080791051 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
13 Hb_002307_030 0.0810884936 - - 40S ribosomal protein S15D [Hevea brasiliensis]
14 Hb_001828_090 0.0824675088 - - prohibitin, putative [Ricinus communis]
15 Hb_001226_160 0.0832690903 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
16 Hb_003878_190 0.085261432 - - hypothetical protein POPTR_0011s11040g [Populus trichocarpa]
17 Hb_000977_080 0.0865946387 - - type II inositol 5-phosphatase, putative [Ricinus communis]
18 Hb_000189_620 0.0870306785 - - hypothetical protein JCGZ_23450 [Jatropha curcas]
19 Hb_007747_090 0.0879524687 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
20 Hb_007101_130 0.0879918569 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002311_350 Hb_002311_350 Hb_000380_190 Hb_000380_190 Hb_002311_350--Hb_000380_190 Hb_001477_110 Hb_001477_110 Hb_002311_350--Hb_001477_110 Hb_004645_050 Hb_004645_050 Hb_002311_350--Hb_004645_050 Hb_000189_270 Hb_000189_270 Hb_002311_350--Hb_000189_270 Hb_005618_140 Hb_005618_140 Hb_002311_350--Hb_005618_140 Hb_001824_070 Hb_001824_070 Hb_002311_350--Hb_001824_070 Hb_000380_190--Hb_001477_110 Hb_000007_100 Hb_000007_100 Hb_000380_190--Hb_000007_100 Hb_000227_230 Hb_000227_230 Hb_000380_190--Hb_000227_230 Hb_000085_320 Hb_000085_320 Hb_000380_190--Hb_000085_320 Hb_023732_070 Hb_023732_070 Hb_000380_190--Hb_023732_070 Hb_001477_110--Hb_001824_070 Hb_001235_210 Hb_001235_210 Hb_001477_110--Hb_001235_210 Hb_000832_140 Hb_000832_140 Hb_001477_110--Hb_000832_140 Hb_001477_110--Hb_000007_100 Hb_000977_080 Hb_000977_080 Hb_004645_050--Hb_000977_080 Hb_004645_050--Hb_001235_210 Hb_004645_050--Hb_000189_270 Hb_000531_020 Hb_000531_020 Hb_004645_050--Hb_000531_020 Hb_002307_030 Hb_002307_030 Hb_004645_050--Hb_002307_030 Hb_000189_270--Hb_000380_190 Hb_001512_070 Hb_001512_070 Hb_000189_270--Hb_001512_070 Hb_000189_270--Hb_000977_080 Hb_002374_490 Hb_002374_490 Hb_000189_270--Hb_002374_490 Hb_000487_250 Hb_000487_250 Hb_005618_140--Hb_000487_250 Hb_002701_240 Hb_002701_240 Hb_005618_140--Hb_002701_240 Hb_005618_140--Hb_001477_110 Hb_005618_140--Hb_000380_190 Hb_089839_020 Hb_089839_020 Hb_005618_140--Hb_089839_020 Hb_009711_030 Hb_009711_030 Hb_001824_070--Hb_009711_030 Hb_001584_070 Hb_001584_070 Hb_001824_070--Hb_001584_070 Hb_003878_190 Hb_003878_190 Hb_001824_070--Hb_003878_190 Hb_000371_080 Hb_000371_080 Hb_001824_070--Hb_000371_080 Hb_000465_060 Hb_000465_060 Hb_001824_070--Hb_000465_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
338.324 188.115 99.3993 131.956 380.636 431.35
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
388.53 727.551 333.296 232.849 71.935

CAGE analysis