Hb_002311_360

Information

Type -
Description -
Location Contig2311: 185991-186563
Sequence    

Annotation

kegg
ID pop:POPTR_0010s00880g
description glycine-rich family protein
nr
ID XP_011009076.1
description PREDICTED: uncharacterized protein LOC105114273 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A067K6F9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18925 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 009_L16.ab1: 185851-186580

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002311_360 0.0 - - PREDICTED: uncharacterized protein LOC105114273 [Populus euphratica]
2 Hb_002704_070 0.0769947663 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH130-like [Jatropha curcas]
3 Hb_000856_010 0.0864502929 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]
4 Hb_009803_050 0.0888050077 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
5 Hb_000928_070 0.0935496172 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
6 Hb_000309_130 0.0950606344 - - hypothetical protein JCGZ_09592 [Jatropha curcas]
7 Hb_000008_440 0.0954199146 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Jatropha curcas]
8 Hb_000230_500 0.0956331739 - - PREDICTED: pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Jatropha curcas]
9 Hb_002043_030 0.0959019579 - - hypothetical protein RCOM_1486170 [Ricinus communis]
10 Hb_001514_120 0.0990628172 - - hypothetical protein VITISV_015004 [Vitis vinifera]
11 Hb_009780_030 0.0998452706 transcription factor TF Family: GRAS hypothetical protein POPTR_0005s14540g [Populus trichocarpa]
12 Hb_005162_060 0.1004362507 - - PREDICTED: putative septum site-determining protein minD homolog, chloroplastic [Jatropha curcas]
13 Hb_000061_230 0.1012191936 - - PREDICTED: putative glycosyltransferase 5 [Jatropha curcas]
14 Hb_001541_120 0.1014613486 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
15 Hb_002450_020 0.1018592591 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
16 Hb_001246_110 0.1021772192 - - PREDICTED: probable purine permease 11 [Jatropha curcas]
17 Hb_030565_030 0.1032195616 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
18 Hb_004078_040 0.1041404646 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
19 Hb_005463_100 0.1057469671 - - hypothetical protein POPTR_0001s08400g [Populus trichocarpa]
20 Hb_002620_020 0.1064253564 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002311_360 Hb_002311_360 Hb_002704_070 Hb_002704_070 Hb_002311_360--Hb_002704_070 Hb_000856_010 Hb_000856_010 Hb_002311_360--Hb_000856_010 Hb_009803_050 Hb_009803_050 Hb_002311_360--Hb_009803_050 Hb_000928_070 Hb_000928_070 Hb_002311_360--Hb_000928_070 Hb_000309_130 Hb_000309_130 Hb_002311_360--Hb_000309_130 Hb_000008_440 Hb_000008_440 Hb_002311_360--Hb_000008_440 Hb_000230_500 Hb_000230_500 Hb_002704_070--Hb_000230_500 Hb_002704_070--Hb_009803_050 Hb_002043_030 Hb_002043_030 Hb_002704_070--Hb_002043_030 Hb_030565_030 Hb_030565_030 Hb_002704_070--Hb_030565_030 Hb_002988_040 Hb_002988_040 Hb_002704_070--Hb_002988_040 Hb_012022_040 Hb_012022_040 Hb_000856_010--Hb_012022_040 Hb_000856_010--Hb_000928_070 Hb_005054_110 Hb_005054_110 Hb_000856_010--Hb_005054_110 Hb_004078_040 Hb_004078_040 Hb_000856_010--Hb_004078_040 Hb_000221_190 Hb_000221_190 Hb_000856_010--Hb_000221_190 Hb_000359_060 Hb_000359_060 Hb_000856_010--Hb_000359_060 Hb_000603_080 Hb_000603_080 Hb_009803_050--Hb_000603_080 Hb_020805_130 Hb_020805_130 Hb_009803_050--Hb_020805_130 Hb_001959_190 Hb_001959_190 Hb_009803_050--Hb_001959_190 Hb_002878_020 Hb_002878_020 Hb_009803_050--Hb_002878_020 Hb_005162_060 Hb_005162_060 Hb_009803_050--Hb_005162_060 Hb_005488_200 Hb_005488_200 Hb_009803_050--Hb_005488_200 Hb_001541_120 Hb_001541_120 Hb_000928_070--Hb_001541_120 Hb_000288_030 Hb_000288_030 Hb_000928_070--Hb_000288_030 Hb_000928_070--Hb_012022_040 Hb_003582_060 Hb_003582_060 Hb_000928_070--Hb_003582_060 Hb_000140_090 Hb_000140_090 Hb_000928_070--Hb_000140_090 Hb_000733_180 Hb_000733_180 Hb_000309_130--Hb_000733_180 Hb_003124_150 Hb_003124_150 Hb_000309_130--Hb_003124_150 Hb_000309_130--Hb_000928_070 Hb_022250_060 Hb_022250_060 Hb_000309_130--Hb_022250_060 Hb_001019_100 Hb_001019_100 Hb_000309_130--Hb_001019_100 Hb_000309_130--Hb_000221_190 Hb_032202_040 Hb_032202_040 Hb_000008_440--Hb_032202_040 Hb_001404_110 Hb_001404_110 Hb_000008_440--Hb_001404_110 Hb_003657_010 Hb_003657_010 Hb_000008_440--Hb_003657_010 Hb_002542_110 Hb_002542_110 Hb_000008_440--Hb_002542_110 Hb_000497_300 Hb_000497_300 Hb_000008_440--Hb_000497_300 Hb_010068_080 Hb_010068_080 Hb_000008_440--Hb_010068_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.21827 15.3695 9.04636 14.2052 6.36375 8.03689
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.2069 17.6039 20.8238 7.2402 17.9648

CAGE analysis