Hb_002311_370

Information

Type transcription factor
Description TF Family: ERF
Location Contig2311: 191893-192807
Sequence    

Annotation

kegg
ID tcc:TCM_021264
description Ethylene-responsive element binding protein, putative
nr
ID AGL34962.1
description ethylene-responsive transcription factor 3 [Hevea brasiliensis]
swissprot
ID P42736
description Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2
trembl
ID R4MSX4
description Ethylene-responsive transcription factor 3 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor rap2-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24334: 191729-192844
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002311_370 0.0 transcription factor TF Family: ERF ethylene-responsive transcription factor 3 [Hevea brasiliensis]
2 Hb_000098_310 0.159784566 - - RecName: Full=Anthocyanidin 3-O-glucosyltransferase 1; AltName: Full=Flavonol 3-O-glucosyltransferase 1; AltName: Full=UDP-glucose flavonoid 3-O-glucosyltransferase 1 [Manihot esculenta]
3 Hb_000976_440 0.16866951 - - UDP-glucosyltransferase, putative [Ricinus communis]
4 Hb_009823_010 0.1744308499 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
5 Hb_000181_160 0.1768904289 - - PREDICTED: uncharacterized protein LOC105637575 isoform X2 [Jatropha curcas]
6 Hb_000556_110 0.1806315073 - - hypothetical protein POPTR_0014s06790g [Populus trichocarpa]
7 Hb_000915_070 0.1876643705 - - ATP binding protein, putative [Ricinus communis]
8 Hb_001454_410 0.1912392768 - - PREDICTED: uncharacterized protein LOC105643453 [Jatropha curcas]
9 Hb_001678_030 0.1967041621 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
10 Hb_003576_050 0.2018187834 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
11 Hb_001959_030 0.2018382093 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001408_050 0.2086190762 - - conserved hypothetical protein [Ricinus communis]
13 Hb_032050_050 0.2123832945 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
14 Hb_055305_010 0.2133294893 - - Disease resistance protein RFL1, putative [Ricinus communis]
15 Hb_001021_030 0.2144027091 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
16 Hb_003031_030 0.2166329133 - - hypothetical protein JCGZ_21288 [Jatropha curcas]
17 Hb_000041_290 0.2172542137 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
18 Hb_031042_030 0.2192809478 - - PREDICTED: WAT1-related protein At5g47470-like isoform X1 [Jatropha curcas]
19 Hb_004657_040 0.2212480172 transcription factor TF Family: WRKY WRKY transcription factor 15 family protein [Populus trichocarpa]
20 Hb_007163_020 0.2219228236 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002311_370 Hb_002311_370 Hb_000098_310 Hb_000098_310 Hb_002311_370--Hb_000098_310 Hb_000976_440 Hb_000976_440 Hb_002311_370--Hb_000976_440 Hb_009823_010 Hb_009823_010 Hb_002311_370--Hb_009823_010 Hb_000181_160 Hb_000181_160 Hb_002311_370--Hb_000181_160 Hb_000556_110 Hb_000556_110 Hb_002311_370--Hb_000556_110 Hb_000915_070 Hb_000915_070 Hb_002311_370--Hb_000915_070 Hb_000098_310--Hb_009823_010 Hb_011200_020 Hb_011200_020 Hb_000098_310--Hb_011200_020 Hb_003576_050 Hb_003576_050 Hb_000098_310--Hb_003576_050 Hb_000098_310--Hb_000181_160 Hb_001408_050 Hb_001408_050 Hb_000098_310--Hb_001408_050 Hb_031042_030 Hb_031042_030 Hb_000098_310--Hb_031042_030 Hb_000976_440--Hb_009823_010 Hb_000976_440--Hb_001408_050 Hb_000762_070 Hb_000762_070 Hb_000976_440--Hb_000762_070 Hb_002072_020 Hb_002072_020 Hb_000976_440--Hb_002072_020 Hb_000976_440--Hb_003576_050 Hb_001678_030 Hb_001678_030 Hb_000976_440--Hb_001678_030 Hb_009823_010--Hb_003576_050 Hb_009823_010--Hb_001408_050 Hb_009823_010--Hb_000181_160 Hb_000638_090 Hb_000638_090 Hb_009823_010--Hb_000638_090 Hb_004657_040 Hb_004657_040 Hb_000181_160--Hb_004657_040 Hb_000181_160--Hb_001408_050 Hb_001454_410 Hb_001454_410 Hb_000181_160--Hb_001454_410 Hb_001221_480 Hb_001221_480 Hb_000181_160--Hb_001221_480 Hb_011618_040 Hb_011618_040 Hb_000556_110--Hb_011618_040 Hb_004195_110 Hb_004195_110 Hb_000556_110--Hb_004195_110 Hb_000556_110--Hb_009823_010 Hb_000556_110--Hb_000098_310 Hb_000025_020 Hb_000025_020 Hb_000556_110--Hb_000025_020 Hb_025254_020 Hb_025254_020 Hb_000915_070--Hb_025254_020 Hb_001959_030 Hb_001959_030 Hb_000915_070--Hb_001959_030 Hb_000915_070--Hb_000098_310 Hb_000915_070--Hb_009823_010 Hb_002597_010 Hb_002597_010 Hb_000915_070--Hb_002597_010 Hb_000580_070 Hb_000580_070 Hb_000915_070--Hb_000580_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.13057 50.483 12.094 31.8769 16.8385 0.445357
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.473977 3.93982 3.75511 147.414 2.77803

CAGE analysis