Hb_002311_380

Information

Type -
Description -
Location Contig2311: 194681-197655
Sequence    

Annotation

kegg
ID pop:POPTR_0010s00910g
description POPTRDRAFT_565522; hypothetical protein
nr
ID XP_012083989.1
description PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
swissprot
ID F1RBN2
description Sperm-associated antigen 1A OS=Danio rerio GN=spag1a PE=2 SV=1
trembl
ID A0A067JYI3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18923 PE=4 SV=1
Gene Ontology
ID GO:0005886
description chaperone binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24335: 194778-197593 , PASA_asmbl_24336: 195681-196151 , PASA_asmbl_24337: 195249-195600
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002311_380 0.0 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
2 Hb_000958_080 0.076220328 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000046_570 0.0784636065 - - hypothetical protein JCGZ_01998 [Jatropha curcas]
4 Hb_005381_020 0.079276683 - - PREDICTED: uncharacterized protein LOC105630417 [Jatropha curcas]
5 Hb_001366_090 0.0794362637 transcription factor TF Family: NAC hypothetical protein RCOM_1341380 [Ricinus communis]
6 Hb_003929_170 0.081478823 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
7 Hb_000635_040 0.0829774996 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
8 Hb_000352_350 0.0849585046 - - PREDICTED: monothiol glutaredoxin-S7, chloroplastic [Jatropha curcas]
9 Hb_002909_040 0.0866769454 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
10 Hb_007062_040 0.0869106086 - - ADP-ribosylation factor GTPase-activating protein AGD2 [Morus notabilis]
11 Hb_004096_160 0.0882739855 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
12 Hb_023313_040 0.0889846685 - - PREDICTED: uncharacterized protein LOC105640827 isoform X2 [Jatropha curcas]
13 Hb_000089_210 0.0906411515 - - unknown [Medicago truncatula]
14 Hb_001723_150 0.092142937 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
15 Hb_000236_490 0.0922104233 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
16 Hb_003119_090 0.0923233296 - - PREDICTED: 14-3-3 protein 6 [Jatropha curcas]
17 Hb_004586_060 0.092426503 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]
18 Hb_002413_010 0.092982935 - - ABC transporter family protein [Hevea brasiliensis]
19 Hb_016347_020 0.0940977833 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like isoform X1 [Populus euphratica]
20 Hb_001579_330 0.0944676279 - - PREDICTED: BOI-related E3 ubiquitin-protein ligase 1-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002311_380 Hb_002311_380 Hb_000958_080 Hb_000958_080 Hb_002311_380--Hb_000958_080 Hb_000046_570 Hb_000046_570 Hb_002311_380--Hb_000046_570 Hb_005381_020 Hb_005381_020 Hb_002311_380--Hb_005381_020 Hb_001366_090 Hb_001366_090 Hb_002311_380--Hb_001366_090 Hb_003929_170 Hb_003929_170 Hb_002311_380--Hb_003929_170 Hb_000635_040 Hb_000635_040 Hb_002311_380--Hb_000635_040 Hb_004096_160 Hb_004096_160 Hb_000958_080--Hb_004096_160 Hb_009449_060 Hb_009449_060 Hb_000958_080--Hb_009449_060 Hb_005322_050 Hb_005322_050 Hb_000958_080--Hb_005322_050 Hb_000089_210 Hb_000089_210 Hb_000958_080--Hb_000089_210 Hb_002909_040 Hb_002909_040 Hb_000958_080--Hb_002909_040 Hb_005730_010 Hb_005730_010 Hb_000958_080--Hb_005730_010 Hb_007062_040 Hb_007062_040 Hb_000046_570--Hb_007062_040 Hb_004586_060 Hb_004586_060 Hb_000046_570--Hb_004586_060 Hb_007248_030 Hb_007248_030 Hb_000046_570--Hb_007248_030 Hb_000390_250 Hb_000390_250 Hb_000046_570--Hb_000390_250 Hb_001405_210 Hb_001405_210 Hb_000046_570--Hb_001405_210 Hb_003912_040 Hb_003912_040 Hb_000046_570--Hb_003912_040 Hb_005381_020--Hb_000046_570 Hb_005381_020--Hb_007062_040 Hb_005381_020--Hb_000390_250 Hb_005381_020--Hb_000635_040 Hb_005381_020--Hb_001366_090 Hb_006573_040 Hb_006573_040 Hb_001366_090--Hb_006573_040 Hb_002232_480 Hb_002232_480 Hb_001366_090--Hb_002232_480 Hb_004994_240 Hb_004994_240 Hb_001366_090--Hb_004994_240 Hb_001366_090--Hb_004586_060 Hb_001366_090--Hb_000046_570 Hb_000236_490 Hb_000236_490 Hb_001366_090--Hb_000236_490 Hb_001087_030 Hb_001087_030 Hb_003929_170--Hb_001087_030 Hb_003929_170--Hb_000046_570 Hb_000207_150 Hb_000207_150 Hb_003929_170--Hb_000207_150 Hb_000009_400 Hb_000009_400 Hb_003929_170--Hb_000009_400 Hb_003929_170--Hb_000390_250 Hb_000107_230 Hb_000107_230 Hb_003929_170--Hb_000107_230 Hb_007800_020 Hb_007800_020 Hb_000635_040--Hb_007800_020 Hb_000130_420 Hb_000130_420 Hb_000635_040--Hb_000130_420 Hb_000635_040--Hb_000046_570 Hb_000362_170 Hb_000362_170 Hb_000635_040--Hb_000362_170 Hb_000567_190 Hb_000567_190 Hb_000635_040--Hb_000567_190 Hb_008226_090 Hb_008226_090 Hb_000635_040--Hb_008226_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.2572 15.788 23.2446 24.5231 12.8093 9.29644
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4757 9.87476 7.29697 11.0715 9.80391

CAGE analysis