Hb_002311_500

Information

Type -
Description -
Location Contig2311: 262671-263807
Sequence    

Annotation

kegg
ID pmum:103323043
description uncharacterized LOC103323043
nr
ID XP_012083977.1
description PREDICTED: uncharacterized protein LOC105643461 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K6E3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18910 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24345: 262793-263713
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002311_500 0.0 - - PREDICTED: uncharacterized protein LOC105643461 [Jatropha curcas]
2 Hb_004567_070 0.0813208489 - - conserved hypothetical protein [Ricinus communis]
3 Hb_009907_020 0.0909183281 - - hypothetical protein CICLE_v10009323mg [Citrus clementina]
4 Hb_000392_170 0.1004899636 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
5 Hb_002995_010 0.1004926203 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
6 Hb_002200_020 0.1050133741 transcription factor TF Family: C2C2-Dof hypothetical protein RCOM_0137680 [Ricinus communis]
7 Hb_000200_270 0.1053546008 - - PREDICTED: lipid phosphate phosphatase 1-like isoform X1 [Jatropha curcas]
8 Hb_002817_030 0.1062771883 - - hypothetical protein POPTR_0001s39195g [Populus trichocarpa]
9 Hb_001571_080 0.1063401389 - - PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Jatropha curcas]
10 Hb_004223_080 0.1107350678 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
11 Hb_027337_010 0.1172168236 - - Potassium transporter, putative [Ricinus communis]
12 Hb_000914_140 0.1209924138 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
13 Hb_010267_020 0.1303814357 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
14 Hb_003992_130 0.1311558887 - - unnamed protein product [Vitis vinifera]
15 Hb_007237_020 0.1326219402 - - PREDICTED: protein trichome birefringence-like 23 [Jatropha curcas]
16 Hb_002053_180 0.132972263 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
17 Hb_005695_070 0.1333476228 - - Cysteine-rich RLK 29 [Theobroma cacao]
18 Hb_005568_140 0.134718155 - - ATP binding protein, putative [Ricinus communis]
19 Hb_000002_370 0.1351522667 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
20 Hb_000856_230 0.1353315322 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FEI 2 [Jatropha curcas]

Gene co-expression network

sample Hb_002311_500 Hb_002311_500 Hb_004567_070 Hb_004567_070 Hb_002311_500--Hb_004567_070 Hb_009907_020 Hb_009907_020 Hb_002311_500--Hb_009907_020 Hb_000392_170 Hb_000392_170 Hb_002311_500--Hb_000392_170 Hb_002995_010 Hb_002995_010 Hb_002311_500--Hb_002995_010 Hb_002200_020 Hb_002200_020 Hb_002311_500--Hb_002200_020 Hb_000200_270 Hb_000200_270 Hb_002311_500--Hb_000200_270 Hb_003777_120 Hb_003777_120 Hb_004567_070--Hb_003777_120 Hb_000002_370 Hb_000002_370 Hb_004567_070--Hb_000002_370 Hb_002053_180 Hb_002053_180 Hb_004567_070--Hb_002053_180 Hb_010407_150 Hb_010407_150 Hb_004567_070--Hb_010407_150 Hb_001571_080 Hb_001571_080 Hb_004567_070--Hb_001571_080 Hb_000878_090 Hb_000878_090 Hb_009907_020--Hb_000878_090 Hb_001160_050 Hb_001160_050 Hb_009907_020--Hb_001160_050 Hb_000771_040 Hb_000771_040 Hb_009907_020--Hb_000771_040 Hb_001769_120 Hb_001769_120 Hb_009907_020--Hb_001769_120 Hb_008749_010 Hb_008749_010 Hb_009907_020--Hb_008749_010 Hb_004316_020 Hb_004316_020 Hb_000392_170--Hb_004316_020 Hb_000392_170--Hb_002200_020 Hb_004223_080 Hb_004223_080 Hb_000392_170--Hb_004223_080 Hb_000856_230 Hb_000856_230 Hb_000392_170--Hb_000856_230 Hb_000392_170--Hb_000200_270 Hb_005834_050 Hb_005834_050 Hb_002995_010--Hb_005834_050 Hb_001776_130 Hb_001776_130 Hb_002995_010--Hb_001776_130 Hb_000035_150 Hb_000035_150 Hb_002995_010--Hb_000035_150 Hb_002817_030 Hb_002817_030 Hb_002995_010--Hb_002817_030 Hb_002995_010--Hb_004567_070 Hb_002200_020--Hb_000200_270 Hb_015037_010 Hb_015037_010 Hb_002200_020--Hb_015037_010 Hb_002200_020--Hb_000856_230 Hb_002540_100 Hb_002540_100 Hb_002200_020--Hb_002540_100 Hb_010267_020 Hb_010267_020 Hb_000200_270--Hb_010267_020 Hb_000200_270--Hb_000856_230 Hb_002918_220 Hb_002918_220 Hb_000200_270--Hb_002918_220 Hb_005695_070 Hb_005695_070 Hb_000200_270--Hb_005695_070 Hb_009421_090 Hb_009421_090 Hb_000200_270--Hb_009421_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.19411 19.9404 8.04593 0.0645008 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.79402 3.13021

CAGE analysis