Hb_002316_020

Information

Type -
Description -
Location Contig2316: 24122-30199
Sequence    

Annotation

kegg
ID rcu:RCOM_1511360
description hypothetical protein
nr
ID XP_012080096.1
description PREDICTED: uncharacterized protein LOC105640407 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K7X4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11499 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24357: 27331-30051 , PASA_asmbl_24358: 28124-28284
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002316_020 0.0 - - PREDICTED: uncharacterized protein LOC105640407 [Jatropha curcas]
2 Hb_010174_180 0.07529422 - - protein binding protein, putative [Ricinus communis]
3 Hb_031385_010 0.0970108493 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
4 Hb_001675_270 0.0975660153 - - PREDICTED: probable inactive nicotinamidase At3g16190 [Jatropha curcas]
5 Hb_003607_140 0.1013357766 - - 3-ketoacyl-CoA thiolase B, putative [Ricinus communis]
6 Hb_000230_360 0.1080390496 - - PREDICTED: BI1-like protein [Jatropha curcas]
7 Hb_001048_100 0.1128658632 - - PREDICTED: lysosomal Pro-X carboxypeptidase [Jatropha curcas]
8 Hb_005582_030 0.1135930774 - - PREDICTED: protein N-lysine methyltransferase METTL21A-like [Jatropha curcas]
9 Hb_005568_050 0.1175107272 - - ascorbate peroxidase [Hevea brasiliensis]
10 Hb_001440_010 0.1179018887 - - PREDICTED: armadillo repeat-containing kinesin-like protein 1 [Populus euphratica]
11 Hb_000731_210 0.1190934272 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002301_370 0.1199503084 - - hypothetical protein JCGZ_21454 [Jatropha curcas]
13 Hb_000202_070 0.1213055884 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
14 Hb_000046_430 0.1221627295 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
15 Hb_000096_110 0.1240819829 - - PREDICTED: uncharacterized protein LOC105787685 isoform X1 [Gossypium raimondii]
16 Hb_000210_040 0.125195965 - - PREDICTED: putative HVA22-like protein g [Jatropha curcas]
17 Hb_030982_050 0.1253867098 - - PREDICTED: gamma-glutamyl hydrolase 2-like [Jatropha curcas]
18 Hb_003879_020 0.1282865491 - - PREDICTED: MATE efflux family protein 1-like [Jatropha curcas]
19 Hb_000689_010 0.1310530416 desease resistance Gene Name: LRR_8 PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
20 Hb_002635_020 0.1317770894 - - hypothetical protein POPTR_0018s09790g [Populus trichocarpa]

Gene co-expression network

sample Hb_002316_020 Hb_002316_020 Hb_010174_180 Hb_010174_180 Hb_002316_020--Hb_010174_180 Hb_031385_010 Hb_031385_010 Hb_002316_020--Hb_031385_010 Hb_001675_270 Hb_001675_270 Hb_002316_020--Hb_001675_270 Hb_003607_140 Hb_003607_140 Hb_002316_020--Hb_003607_140 Hb_000230_360 Hb_000230_360 Hb_002316_020--Hb_000230_360 Hb_001048_100 Hb_001048_100 Hb_002316_020--Hb_001048_100 Hb_010174_180--Hb_003607_140 Hb_010174_180--Hb_031385_010 Hb_002635_020 Hb_002635_020 Hb_010174_180--Hb_002635_020 Hb_010174_180--Hb_001675_270 Hb_000731_210 Hb_000731_210 Hb_010174_180--Hb_000731_210 Hb_031385_010--Hb_000230_360 Hb_031385_010--Hb_001048_100 Hb_000061_310 Hb_000061_310 Hb_031385_010--Hb_000061_310 Hb_003687_040 Hb_003687_040 Hb_031385_010--Hb_003687_040 Hb_005568_050 Hb_005568_050 Hb_001675_270--Hb_005568_050 Hb_001675_270--Hb_003607_140 Hb_005582_030 Hb_005582_030 Hb_001675_270--Hb_005582_030 Hb_001439_010 Hb_001439_010 Hb_001675_270--Hb_001439_010 Hb_006469_090 Hb_006469_090 Hb_003607_140--Hb_006469_090 Hb_003607_140--Hb_001439_010 Hb_003607_140--Hb_002635_020 Hb_000210_040 Hb_000210_040 Hb_003607_140--Hb_000210_040 Hb_000230_360--Hb_000061_310 Hb_002301_370 Hb_002301_370 Hb_000230_360--Hb_002301_370 Hb_001440_010 Hb_001440_010 Hb_000230_360--Hb_001440_010 Hb_000834_220 Hb_000834_220 Hb_000230_360--Hb_000834_220 Hb_001019_160 Hb_001019_160 Hb_000230_360--Hb_001019_160 Hb_000760_080 Hb_000760_080 Hb_001048_100--Hb_000760_080 Hb_001048_100--Hb_000731_210 Hb_001048_100--Hb_002301_370 Hb_001048_100--Hb_000230_360 Hb_001048_100--Hb_000061_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.322143 6.12664 12.0854 9.33095 0.0546654 0.0144706
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.294156 0.334266 0.434109 6.62365 8.75336

CAGE analysis