Hb_002316_050

Information

Type -
Description -
Location Contig2316: 41895-42832
Sequence    

Annotation

kegg
ID rcu:RCOM_1511580
description hypothetical protein
nr
ID XP_002511429.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FYL8
description Protein NUCLEAR FUSION DEFECTIVE 2 OS=Arabidopsis thaliana GN=NFD2 PE=2 SV=1
trembl
ID B9RB54
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1511580 PE=4 SV=1
Gene Ontology
ID GO:0003723
description ribonuclease 3 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24361: 38214-41439 , PASA_asmbl_24362: 41879-43186
cDNA
(Sanger)
(ID:Location)		 022_B22.ab1: 41879-42900

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002316_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001638_040 0.1244605237 - - Nucleobase-ascorbate transporter 3 [Glycine soja]
3 Hb_000265_250 0.1269108061 - - auxilin, putative [Ricinus communis]
4 Hb_003633_140 0.1283965357 - - PREDICTED: uncharacterized protein LOC105647486 isoform X1 [Jatropha curcas]
5 Hb_000808_070 0.128740026 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
6 Hb_018133_030 0.1307026806 - - Heme-binding protein, putative [Ricinus communis]
7 Hb_000540_120 0.1312813784 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
8 Hb_007257_050 0.1315767266 - - protein with unknown function [Ricinus communis]
9 Hb_010831_020 0.1325869076 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
10 Hb_001301_230 0.1336942974 - - PREDICTED: uncharacterized protein LOC105632949 isoform X2 [Jatropha curcas]
11 Hb_011465_030 0.1368023544 - - PREDICTED: B2 protein [Jatropha curcas]
12 Hb_003710_040 0.1396110527 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
13 Hb_010584_010 0.1408531983 - - PREDICTED: probable zinc transporter protein DDB_G0282067 [Jatropha curcas]
14 Hb_009028_030 0.1417902367 desease resistance Gene Name: NB-ARC NBS type disease resistance protein, putative [Theobroma cacao]
15 Hb_003349_010 0.1424255346 desease resistance Gene Name: NB-ARC hypothetical protein CICLE_v10023911mg [Citrus clementina]
16 Hb_001999_250 0.1437256369 - - PREDICTED: uncharacterized protein LOC105133073 isoform X1 [Populus euphratica]
17 Hb_001907_100 0.144544271 - - PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]
18 Hb_012226_010 0.1445823658 - - PREDICTED: protein DGCR14 [Jatropha curcas]
19 Hb_000449_050 0.1457569184 - - Protein bem46, putative [Ricinus communis]
20 Hb_001189_130 0.1484453744 transcription factor TF Family: NAC PREDICTED: protein ATAF2-like [Jatropha curcas]

Gene co-expression network

sample Hb_002316_050 Hb_002316_050 Hb_001638_040 Hb_001638_040 Hb_002316_050--Hb_001638_040 Hb_000265_250 Hb_000265_250 Hb_002316_050--Hb_000265_250 Hb_003633_140 Hb_003633_140 Hb_002316_050--Hb_003633_140 Hb_000808_070 Hb_000808_070 Hb_002316_050--Hb_000808_070 Hb_018133_030 Hb_018133_030 Hb_002316_050--Hb_018133_030 Hb_000540_120 Hb_000540_120 Hb_002316_050--Hb_000540_120 Hb_010831_020 Hb_010831_020 Hb_001638_040--Hb_010831_020 Hb_001638_040--Hb_000540_120 Hb_000449_050 Hb_000449_050 Hb_001638_040--Hb_000449_050 Hb_164010_070 Hb_164010_070 Hb_001638_040--Hb_164010_070 Hb_000853_030 Hb_000853_030 Hb_001638_040--Hb_000853_030 Hb_002739_150 Hb_002739_150 Hb_001638_040--Hb_002739_150 Hb_011465_030 Hb_011465_030 Hb_000265_250--Hb_011465_030 Hb_002477_150 Hb_002477_150 Hb_000265_250--Hb_002477_150 Hb_148209_020 Hb_148209_020 Hb_000265_250--Hb_148209_020 Hb_009028_030 Hb_009028_030 Hb_000265_250--Hb_009028_030 Hb_001247_230 Hb_001247_230 Hb_000265_250--Hb_001247_230 Hb_002849_080 Hb_002849_080 Hb_000265_250--Hb_002849_080 Hb_028795_010 Hb_028795_010 Hb_003633_140--Hb_028795_010 Hb_002609_090 Hb_002609_090 Hb_003633_140--Hb_002609_090 Hb_001999_250 Hb_001999_250 Hb_003633_140--Hb_001999_250 Hb_007257_050 Hb_007257_050 Hb_003633_140--Hb_007257_050 Hb_031089_030 Hb_031089_030 Hb_003633_140--Hb_031089_030 Hb_001301_230 Hb_001301_230 Hb_000808_070--Hb_001301_230 Hb_003157_010 Hb_003157_010 Hb_000808_070--Hb_003157_010 Hb_006501_020 Hb_006501_020 Hb_000808_070--Hb_006501_020 Hb_000808_070--Hb_018133_030 Hb_000808_070--Hb_007257_050 Hb_000932_070 Hb_000932_070 Hb_000808_070--Hb_000932_070 Hb_018133_030--Hb_009028_030 Hb_057451_010 Hb_057451_010 Hb_018133_030--Hb_057451_010 Hb_004449_050 Hb_004449_050 Hb_018133_030--Hb_004449_050 Hb_030827_060 Hb_030827_060 Hb_018133_030--Hb_030827_060 Hb_018133_030--Hb_164010_070 Hb_000540_120--Hb_011465_030 Hb_007403_050 Hb_007403_050 Hb_000540_120--Hb_007403_050 Hb_001189_130 Hb_001189_130 Hb_000540_120--Hb_001189_130 Hb_000140_070 Hb_000140_070 Hb_000540_120--Hb_000140_070 Hb_000540_120--Hb_010831_020 Hb_003125_030 Hb_003125_030 Hb_000540_120--Hb_003125_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
183.014 511.615 68.094 125.183 274.206 287.456
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
84.1336 37.4152 38.0958 100.078 17.392

CAGE analysis