Hb_002316_120

Information

Type -
Description -
Location Contig2316: 79895-82484
Sequence    

Annotation

kegg
ID pop:POPTR_0015s08460g
description hypothetical protein
nr
ID XP_006374514.1
description hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
swissprot
ID Q9BW72
description HIG1 domain family member 2A, mitochondrial OS=Homo sapiens GN=HIGD2A PE=1 SV=1
trembl
ID U5FQS0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s08460g PE=4 SV=1
Gene Ontology
ID GO:0016021
description ring-h2 finger protein atl48

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24369: 79902-82683
cDNA
(Sanger)
(ID:Location)		 004_F09.ab1: 79902-82576 , 023_F18.ab1: 79902-82576

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002316_120 0.0 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
2 Hb_000789_110 0.0392486959 - - RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101 [Hevea brasiliensis]
3 Hb_000300_390 0.0494481961 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
4 Hb_000270_720 0.0630749997 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
5 Hb_001377_380 0.0728676123 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
6 Hb_012539_020 0.073920128 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
7 Hb_004007_180 0.0741212846 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
8 Hb_000820_130 0.0741520459 - - PREDICTED: uncharacterized protein LOC105769309 isoform X1 [Gossypium raimondii]
9 Hb_000635_080 0.0789871545 - - 60S ribosomal protein L17A [Hevea brasiliensis]
10 Hb_006588_080 0.079486952 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
11 Hb_001780_050 0.0824904967 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Jatropha curcas]
12 Hb_120823_010 0.0832865632 - - -
13 Hb_000367_210 0.0843032797 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
14 Hb_005663_120 0.0862784293 - - PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]
15 Hb_000780_210 0.0873571463 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
16 Hb_001155_040 0.0878872298 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
17 Hb_000163_130 0.0915915068 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]
18 Hb_000389_080 0.0932711897 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
19 Hb_004735_050 0.093291753 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
20 Hb_005914_200 0.0965045863 - - PREDICTED: 60S ribosomal protein L23-like isoform X1 [Tarenaya hassleriana]

Gene co-expression network

sample Hb_002316_120 Hb_002316_120 Hb_000789_110 Hb_000789_110 Hb_002316_120--Hb_000789_110 Hb_000300_390 Hb_000300_390 Hb_002316_120--Hb_000300_390 Hb_000270_720 Hb_000270_720 Hb_002316_120--Hb_000270_720 Hb_001377_380 Hb_001377_380 Hb_002316_120--Hb_001377_380 Hb_012539_020 Hb_012539_020 Hb_002316_120--Hb_012539_020 Hb_004007_180 Hb_004007_180 Hb_002316_120--Hb_004007_180 Hb_000789_110--Hb_000270_720 Hb_000789_110--Hb_000300_390 Hb_000820_130 Hb_000820_130 Hb_000789_110--Hb_000820_130 Hb_000789_110--Hb_001377_380 Hb_000789_110--Hb_004007_180 Hb_005663_120 Hb_005663_120 Hb_000300_390--Hb_005663_120 Hb_000300_390--Hb_012539_020 Hb_120823_010 Hb_120823_010 Hb_000300_390--Hb_120823_010 Hb_032969_030 Hb_032969_030 Hb_000300_390--Hb_032969_030 Hb_000270_720--Hb_004007_180 Hb_000599_280 Hb_000599_280 Hb_000270_720--Hb_000599_280 Hb_000270_720--Hb_000820_130 Hb_004755_030 Hb_004755_030 Hb_000270_720--Hb_004755_030 Hb_000780_210 Hb_000780_210 Hb_001377_380--Hb_000780_210 Hb_000635_080 Hb_000635_080 Hb_001377_380--Hb_000635_080 Hb_004545_130 Hb_004545_130 Hb_001377_380--Hb_004545_130 Hb_001377_380--Hb_000300_390 Hb_000389_080 Hb_000389_080 Hb_012539_020--Hb_000389_080 Hb_005914_200 Hb_005914_200 Hb_012539_020--Hb_005914_200 Hb_001780_050 Hb_001780_050 Hb_012539_020--Hb_001780_050 Hb_012539_020--Hb_005663_120 Hb_004007_180--Hb_000599_280 Hb_006588_080 Hb_006588_080 Hb_004007_180--Hb_006588_080 Hb_004735_050 Hb_004735_050 Hb_004007_180--Hb_004735_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.7254 5.13939 11.5184 36.1649 11.9348 23.6622
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
102.852 160.108 56.6358 25.2116 12.9446

CAGE analysis