Hb_002316_130

Information

Type -
Description -
Location Contig2316: 84361-86048
Sequence    

Annotation

kegg
ID pop:POPTR_0015s08440g
description POPTRDRAFT_251989; hypothetical protein
nr
ID XP_002321577.2
description hypothetical protein POPTR_0015s08440g [Populus trichocarpa]
swissprot
ID Q9FL12
description Protease Do-like 9 OS=Arabidopsis thaliana GN=DEGP9 PE=1 SV=1
trembl
ID B9IEN8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s08440g PE=4 SV=2
Gene Ontology
ID GO:0003824
description protease do-like 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24371: 83044-85941
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002316_130 0.0 - - hypothetical protein POPTR_0015s08440g [Populus trichocarpa]
2 Hb_030928_040 0.123960723 - - RNA-binding protein, putative [Ricinus communis]
3 Hb_000317_470 0.1249844335 - - PREDICTED: CCR4-NOT transcription complex subunit 11 [Jatropha curcas]
4 Hb_005144_090 0.1304535715 - - PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1-like [Citrus sinensis]
5 Hb_000049_140 0.131607175 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Jatropha curcas]
6 Hb_003185_010 0.1320280055 - - PREDICTED: V-type proton ATPase subunit c''1 [Jatropha curcas]
7 Hb_002783_170 0.1339068491 - - PREDICTED: BRCA1-A complex subunit BRE isoform X2 [Jatropha curcas]
8 Hb_001810_030 0.1342624847 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
9 Hb_001140_270 0.1376833878 - - hypothetical protein EUGRSUZ_E00166 [Eucalyptus grandis]
10 Hb_001188_070 0.138852675 - - PREDICTED: protein disulfide-isomerase 5-1 [Jatropha curcas]
11 Hb_011618_050 0.1390827283 - - PREDICTED: uncharacterized protein LOC105634948 [Jatropha curcas]
12 Hb_000331_060 0.1394741846 - - PREDICTED: 60S ribosomal protein L17-2-like isoform X2 [Jatropha curcas]
13 Hb_000522_170 0.1404841665 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 1 [Jatropha curcas]
14 Hb_000011_360 0.1415851996 - - PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Fragaria vesca subsp. vesca]
15 Hb_000414_050 0.1423739928 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
16 Hb_000345_510 0.1435131601 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
17 Hb_001632_040 0.1455264401 - - PREDICTED: transmembrane protein adipocyte-associated 1 homolog isoform X1 [Jatropha curcas]
18 Hb_002784_080 0.1463436121 - - PREDICTED: DNA replication complex GINS protein PSF3-like [Jatropha curcas]
19 Hb_143395_010 0.1464577684 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
20 Hb_000844_070 0.1467601137 - - hypothetical protein POPTR_0014s03640g [Populus trichocarpa]

Gene co-expression network

sample Hb_002316_130 Hb_002316_130 Hb_030928_040 Hb_030928_040 Hb_002316_130--Hb_030928_040 Hb_000317_470 Hb_000317_470 Hb_002316_130--Hb_000317_470 Hb_005144_090 Hb_005144_090 Hb_002316_130--Hb_005144_090 Hb_000049_140 Hb_000049_140 Hb_002316_130--Hb_000049_140 Hb_003185_010 Hb_003185_010 Hb_002316_130--Hb_003185_010 Hb_002783_170 Hb_002783_170 Hb_002316_130--Hb_002783_170 Hb_000236_240 Hb_000236_240 Hb_030928_040--Hb_000236_240 Hb_005618_050 Hb_005618_050 Hb_030928_040--Hb_005618_050 Hb_004785_100 Hb_004785_100 Hb_030928_040--Hb_004785_100 Hb_001821_160 Hb_001821_160 Hb_030928_040--Hb_001821_160 Hb_004837_190 Hb_004837_190 Hb_030928_040--Hb_004837_190 Hb_123915_040 Hb_123915_040 Hb_000317_470--Hb_123915_040 Hb_032986_010 Hb_032986_010 Hb_000317_470--Hb_032986_010 Hb_000522_170 Hb_000522_170 Hb_000317_470--Hb_000522_170 Hb_003163_020 Hb_003163_020 Hb_000317_470--Hb_003163_020 Hb_007416_300 Hb_007416_300 Hb_000317_470--Hb_007416_300 Hb_002272_130 Hb_002272_130 Hb_000317_470--Hb_002272_130 Hb_011618_050 Hb_011618_050 Hb_005144_090--Hb_011618_050 Hb_005144_090--Hb_000049_140 Hb_000417_130 Hb_000417_130 Hb_005144_090--Hb_000417_130 Hb_000297_160 Hb_000297_160 Hb_005144_090--Hb_000297_160 Hb_002013_020 Hb_002013_020 Hb_005144_090--Hb_002013_020 Hb_005144_090--Hb_123915_040 Hb_000875_080 Hb_000875_080 Hb_000049_140--Hb_000875_080 Hb_000336_210 Hb_000336_210 Hb_000049_140--Hb_000336_210 Hb_004453_130 Hb_004453_130 Hb_000049_140--Hb_004453_130 Hb_000049_140--Hb_011618_050 Hb_000049_140--Hb_000297_160 Hb_006588_200 Hb_006588_200 Hb_003185_010--Hb_006588_200 Hb_003185_010--Hb_007416_300 Hb_010381_090 Hb_010381_090 Hb_003185_010--Hb_010381_090 Hb_003185_010--Hb_000317_470 Hb_003549_150 Hb_003549_150 Hb_003185_010--Hb_003549_150 Hb_003994_230 Hb_003994_230 Hb_003185_010--Hb_003994_230 Hb_000414_050 Hb_000414_050 Hb_002783_170--Hb_000414_050 Hb_000776_100 Hb_000776_100 Hb_002783_170--Hb_000776_100 Hb_002836_140 Hb_002836_140 Hb_002783_170--Hb_002836_140 Hb_000915_080 Hb_000915_080 Hb_002783_170--Hb_000915_080 Hb_007951_040 Hb_007951_040 Hb_002783_170--Hb_007951_040 Hb_000101_380 Hb_000101_380 Hb_002783_170--Hb_000101_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.18138 0.697577 2.81553 1.49952 3.7059 1.42281
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.51222 1.87428 1.40031 1.90976 0.667314

CAGE analysis