Hb_002316_140

Information

Type -
Description -
Location Contig2316: 88092-93056
Sequence    

Annotation

kegg
ID cam:101504276
description rac-like GTP-binding protein ARAC10-like
nr
ID XP_011015598.1
description PREDICTED: rac-like GTP-binding protein 3 [Populus euphratica]
swissprot
ID Q6Z808
description Rac-like GTP-binding protein 3 OS=Oryza sativa subsp. japonica GN=RAC3 PE=2 SV=1
trembl
ID A0A067KFV3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11511 PE=3 SV=1
Gene Ontology
ID GO:0005622
description rac-like gtp-binding protein arac8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24372: 91057-93041 , PASA_asmbl_24373: 89379-93070 , PASA_asmbl_24374: 92447-92561
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002316_140 0.0 - - PREDICTED: rac-like GTP-binding protein 3 [Populus euphratica]
2 Hb_002572_020 0.0657189283 transcription factor TF Family: SBP hypothetical protein POPTR_0005s28010g [Populus trichocarpa]
3 Hb_010098_020 0.0706003225 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
4 Hb_014497_100 0.0709439334 - - PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
5 Hb_000537_100 0.0724742811 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
6 Hb_001178_010 0.0795650884 - - PREDICTED: uncharacterized protein LOC105629461 [Jatropha curcas]
7 Hb_073973_090 0.085641914 - - Aminotransferase ybdL, putative [Ricinus communis]
8 Hb_002631_240 0.0862287094 - - JHL17M24.3 [Jatropha curcas]
9 Hb_000926_200 0.0885732113 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
10 Hb_000028_520 0.0896337385 - - hypothetical protein L484_025125 [Morus notabilis]
11 Hb_002157_120 0.0908667399 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002874_180 0.0917737906 - - PREDICTED: protein AIG2-like isoform X1 [Jatropha curcas]
13 Hb_001882_010 0.0918198504 - - -
14 Hb_000163_260 0.0925934867 - - PREDICTED: uncharacterized protein LOC105642518 [Jatropha curcas]
15 Hb_032202_100 0.0943427551 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
16 Hb_157023_020 0.0947001679 - - nucleic acid binding protein, putative [Ricinus communis]
17 Hb_000061_180 0.0957803776 - - exonuclease, putative [Ricinus communis]
18 Hb_000035_160 0.0967928119 - - PREDICTED: formin-like protein 18 [Jatropha curcas]
19 Hb_011671_260 0.0980259422 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
20 Hb_000926_080 0.0991842177 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002316_140 Hb_002316_140 Hb_002572_020 Hb_002572_020 Hb_002316_140--Hb_002572_020 Hb_010098_020 Hb_010098_020 Hb_002316_140--Hb_010098_020 Hb_014497_100 Hb_014497_100 Hb_002316_140--Hb_014497_100 Hb_000537_100 Hb_000537_100 Hb_002316_140--Hb_000537_100 Hb_001178_010 Hb_001178_010 Hb_002316_140--Hb_001178_010 Hb_073973_090 Hb_073973_090 Hb_002316_140--Hb_073973_090 Hb_000603_160 Hb_000603_160 Hb_002572_020--Hb_000603_160 Hb_002413_010 Hb_002413_010 Hb_002572_020--Hb_002413_010 Hb_000365_230 Hb_000365_230 Hb_002572_020--Hb_000365_230 Hb_000173_310 Hb_000173_310 Hb_002572_020--Hb_000173_310 Hb_183433_010 Hb_183433_010 Hb_002572_020--Hb_183433_010 Hb_010098_020--Hb_000537_100 Hb_002284_210 Hb_002284_210 Hb_010098_020--Hb_002284_210 Hb_146255_020 Hb_146255_020 Hb_010098_020--Hb_146255_020 Hb_006615_050 Hb_006615_050 Hb_010098_020--Hb_006615_050 Hb_010098_020--Hb_002572_020 Hb_014497_100--Hb_001178_010 Hb_014497_100--Hb_000537_100 Hb_004129_090 Hb_004129_090 Hb_014497_100--Hb_004129_090 Hb_005946_040 Hb_005946_040 Hb_014497_100--Hb_005946_040 Hb_000163_260 Hb_000163_260 Hb_014497_100--Hb_000163_260 Hb_029622_120 Hb_029622_120 Hb_000537_100--Hb_029622_120 Hb_000537_100--Hb_005946_040 Hb_000537_100--Hb_073973_090 Hb_002631_240 Hb_002631_240 Hb_000537_100--Hb_002631_240 Hb_000537_100--Hb_001178_010 Hb_001178_010--Hb_004129_090 Hb_001900_140 Hb_001900_140 Hb_001178_010--Hb_001900_140 Hb_000926_200 Hb_000926_200 Hb_001178_010--Hb_000926_200 Hb_000035_090 Hb_000035_090 Hb_073973_090--Hb_000035_090 Hb_000023_360 Hb_000023_360 Hb_073973_090--Hb_000023_360 Hb_073973_090--Hb_002631_240 Hb_011671_260 Hb_011671_260 Hb_073973_090--Hb_011671_260 Hb_049575_010 Hb_049575_010 Hb_073973_090--Hb_049575_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.27542 5.24184 13.5519 10.6535 4.62147 4.12071
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.05693 8.48855 3.79896 3.45694 8.93591

CAGE analysis