Hb_002316_170

Information

Type -
Description -
Location Contig2316: 121482-127755
Sequence    

Annotation

kegg
ID rcu:RCOM_1511950
description purine permease, putative
nr
ID XP_002511446.1
description purine permease, putative [Ricinus communis]
swissprot
ID Q27GI3
description Nucleobase-ascorbate transporter 6 OS=Arabidopsis thaliana GN=NAT6 PE=2 SV=2
trembl
ID B9RB71
description Purine permease, putative OS=Ricinus communis GN=RCOM_1511950 PE=4 SV=1
Gene Ontology
ID GO:0016020
description nucleobase-ascorbate transporter 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24380: 121430-127870 , PASA_asmbl_24381: 121630-127870 , PASA_asmbl_24382: 125280-127870 , PASA_asmbl_24383: 121430-123456
cDNA
(Sanger)
(ID:Location)		 011_P14.ab1: 121430-123386 , 030_C11.ab1: 121430-123293

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002316_170 0.0 - - purine permease, putative [Ricinus communis]
2 Hb_000220_080 0.0897759437 - - kinase, putative [Ricinus communis]
3 Hb_006949_060 0.1001402128 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
4 Hb_000000_120 0.1029020901 - - hypothetical protein EUGRSUZ_A004731, partial [Eucalyptus grandis]
5 Hb_010407_030 0.1067203595 - - PREDICTED: casein kinase I-like [Jatropha curcas]
6 Hb_001009_150 0.1085502652 - - Glyceraldehyde-3-phosphate dehydrogenase [Gossypium arboreum]
7 Hb_005772_030 0.1154739544 - - PREDICTED: protein trichome birefringence-like 35 [Jatropha curcas]
8 Hb_000318_040 0.1164955631 - - hypothetical protein JCGZ_04877 [Jatropha curcas]
9 Hb_000227_320 0.1204596162 - - unnamed protein product [Vitis vinifera]
10 Hb_158845_060 0.1214991224 - - PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]
11 Hb_000950_040 0.1226581712 - - cation-transporting atpase plant, putative [Ricinus communis]
12 Hb_003050_150 0.124976126 - - endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative [Ricinus communis]
13 Hb_000019_170 0.1255923965 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
14 Hb_000732_230 0.1265050727 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]
15 Hb_000248_100 0.1279862082 - - PREDICTED: NADPH-dependent thioredoxin reductase 3 [Populus euphratica]
16 Hb_000984_140 0.1285602306 - - PREDICTED: xylulose kinase [Jatropha curcas]
17 Hb_002072_010 0.1286774053 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000309_030 0.1306139755 - - PREDICTED: formate dehydrogenase, mitochondrial [Jatropha curcas]
19 Hb_003849_120 0.1314177687 - - PREDICTED: uncharacterized protein LOC100264440 [Vitis vinifera]
20 Hb_115513_040 0.1314707182 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002316_170 Hb_002316_170 Hb_000220_080 Hb_000220_080 Hb_002316_170--Hb_000220_080 Hb_006949_060 Hb_006949_060 Hb_002316_170--Hb_006949_060 Hb_000000_120 Hb_000000_120 Hb_002316_170--Hb_000000_120 Hb_010407_030 Hb_010407_030 Hb_002316_170--Hb_010407_030 Hb_001009_150 Hb_001009_150 Hb_002316_170--Hb_001009_150 Hb_005772_030 Hb_005772_030 Hb_002316_170--Hb_005772_030 Hb_000220_080--Hb_000000_120 Hb_000072_020 Hb_000072_020 Hb_000220_080--Hb_000072_020 Hb_000220_080--Hb_001009_150 Hb_000000_110 Hb_000000_110 Hb_000220_080--Hb_000000_110 Hb_000220_080--Hb_006949_060 Hb_006949_060--Hb_010407_030 Hb_000227_320 Hb_000227_320 Hb_006949_060--Hb_000227_320 Hb_132840_030 Hb_132840_030 Hb_006949_060--Hb_132840_030 Hb_000950_040 Hb_000950_040 Hb_006949_060--Hb_000950_040 Hb_006949_060--Hb_001009_150 Hb_003506_020 Hb_003506_020 Hb_000000_120--Hb_003506_020 Hb_005970_010 Hb_005970_010 Hb_000000_120--Hb_005970_010 Hb_002072_010 Hb_002072_010 Hb_000000_120--Hb_002072_010 Hb_003125_180 Hb_003125_180 Hb_000000_120--Hb_003125_180 Hb_010381_020 Hb_010381_020 Hb_010407_030--Hb_010381_020 Hb_002739_120 Hb_002739_120 Hb_010407_030--Hb_002739_120 Hb_010407_030--Hb_001009_150 Hb_005854_040 Hb_005854_040 Hb_010407_030--Hb_005854_040 Hb_009078_020 Hb_009078_020 Hb_010407_030--Hb_009078_020 Hb_001009_150--Hb_002739_120 Hb_001195_420 Hb_001195_420 Hb_001009_150--Hb_001195_420 Hb_000318_040 Hb_000318_040 Hb_001009_150--Hb_000318_040 Hb_028077_020 Hb_028077_020 Hb_001009_150--Hb_028077_020 Hb_000984_140 Hb_000984_140 Hb_005772_030--Hb_000984_140 Hb_002809_160 Hb_002809_160 Hb_005772_030--Hb_002809_160 Hb_004204_210 Hb_004204_210 Hb_005772_030--Hb_004204_210 Hb_012353_040 Hb_012353_040 Hb_005772_030--Hb_012353_040 Hb_002025_270 Hb_002025_270 Hb_005772_030--Hb_002025_270 Hb_005772_030--Hb_009078_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3231 56.2767 46.9688 78.2587 23.4577 16.4585
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.0209 2.26826 4.31508 66.0473 44.1116

CAGE analysis