Hb_002320_040

Information

Type -
Description -
Location Contig2320: 44349-44846
Sequence    

Annotation

kegg
ID csv:101224653
description oligosaccharyltransferase complex subunit ostc-like
nr
ID XP_012075188.1
description PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
swissprot
ID Q6GNY6
description Oligosaccharyltransferase complex subunit ostc-A OS=Xenopus laevis GN=ostc-a PE=2 SV=1
trembl
ID A0A067KTT0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09368 PE=4 SV=1
Gene Ontology
ID GO:0005886
description oligosaccharyltransferase complex subunit ostc

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24397: 44182-44856
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002320_040 0.0 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
2 Hb_024958_010 0.0624241605 - - PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Jatropha curcas]
3 Hb_000684_380 0.0695914949 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
4 Hb_034552_030 0.0718336538 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
5 Hb_002936_010 0.0725788642 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
6 Hb_004837_240 0.0742123148 - - PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]
7 Hb_000062_070 0.0742357094 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
8 Hb_007576_080 0.0759518344 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
9 Hb_007423_040 0.0776111443 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
10 Hb_005365_030 0.0785839368 - - hypothetical protein POPTR_0002s24010g [Populus trichocarpa]
11 Hb_001359_050 0.0857720894 - - conserved hypothetical protein [Ricinus communis]
12 Hb_028285_010 0.0863079546 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
13 Hb_006588_200 0.0874133672 - - 3-beta-hydroxy-delta5-steroid dehydrogenase, putative [Ricinus communis]
14 Hb_000796_210 0.0877303215 - - conserved hypothetical protein [Ricinus communis]
15 Hb_013738_020 0.089358575 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
16 Hb_028872_090 0.089412995 - - PREDICTED: urease [Jatropha curcas]
17 Hb_000589_120 0.089993471 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Gossypium raimondii]
18 Hb_000020_150 0.0905024608 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
19 Hb_001408_040 0.0908650459 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
20 Hb_003549_150 0.0915241419 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_002320_040 Hb_002320_040 Hb_024958_010 Hb_024958_010 Hb_002320_040--Hb_024958_010 Hb_000684_380 Hb_000684_380 Hb_002320_040--Hb_000684_380 Hb_034552_030 Hb_034552_030 Hb_002320_040--Hb_034552_030 Hb_002936_010 Hb_002936_010 Hb_002320_040--Hb_002936_010 Hb_004837_240 Hb_004837_240 Hb_002320_040--Hb_004837_240 Hb_000062_070 Hb_000062_070 Hb_002320_040--Hb_000062_070 Hb_024958_010--Hb_002936_010 Hb_001359_050 Hb_001359_050 Hb_024958_010--Hb_001359_050 Hb_024958_010--Hb_000684_380 Hb_008725_230 Hb_008725_230 Hb_024958_010--Hb_008725_230 Hb_006570_080 Hb_006570_080 Hb_024958_010--Hb_006570_080 Hb_000589_120 Hb_000589_120 Hb_000684_380--Hb_000589_120 Hb_000768_090 Hb_000768_090 Hb_000684_380--Hb_000768_090 Hb_004058_030 Hb_004058_030 Hb_000684_380--Hb_004058_030 Hb_000684_380--Hb_001359_050 Hb_000331_550 Hb_000331_550 Hb_000684_380--Hb_000331_550 Hb_006588_200 Hb_006588_200 Hb_034552_030--Hb_006588_200 Hb_000020_150 Hb_000020_150 Hb_034552_030--Hb_000020_150 Hb_003464_080 Hb_003464_080 Hb_034552_030--Hb_003464_080 Hb_028872_090 Hb_028872_090 Hb_034552_030--Hb_028872_090 Hb_000120_430 Hb_000120_430 Hb_034552_030--Hb_000120_430 Hb_002936_010--Hb_006570_080 Hb_002936_010--Hb_001359_050 Hb_005588_060 Hb_005588_060 Hb_002936_010--Hb_005588_060 Hb_000720_040 Hb_000720_040 Hb_002936_010--Hb_000720_040 Hb_003994_230 Hb_003994_230 Hb_002936_010--Hb_003994_230 Hb_004837_240--Hb_000684_380 Hb_004837_240--Hb_000589_120 Hb_014109_040 Hb_014109_040 Hb_004837_240--Hb_014109_040 Hb_007576_080 Hb_007576_080 Hb_004837_240--Hb_007576_080 Hb_000317_240 Hb_000317_240 Hb_004837_240--Hb_000317_240 Hb_028285_010 Hb_028285_010 Hb_000062_070--Hb_028285_010 Hb_005048_130 Hb_005048_130 Hb_000062_070--Hb_005048_130 Hb_000649_110 Hb_000649_110 Hb_000062_070--Hb_000649_110 Hb_005365_030 Hb_005365_030 Hb_000062_070--Hb_005365_030 Hb_000062_070--Hb_034552_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.046 39.0138 45.0994 39.7315 41.8531 37.9014
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.8812 56.3581 29.1044 48.9058 14.6697

CAGE analysis