Hb_002324_050

Information

Type -
Description -
Location Contig2324: 30651-31082
Sequence    

Annotation

kegg
ID atr:s00420p00013340
description AMTR_s00420p00013340; hypothetical protein
nr
ID ERN10468.1
description hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
swissprot
ID -
description -
trembl
ID A0A0A9UZ51
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24435: 29757-32472
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002324_050 0.0 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
2 Hb_003656_170 0.0821640553 - - PREDICTED: phenylalanine ammonia-lyase-like [Jatropha curcas]
3 Hb_002324_040 0.1013814817 - - PREDICTED: subtilisin-like protease SBT1.6 [Jatropha curcas]
4 Hb_004032_250 0.1029796667 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003964_010 0.1045629657 transcription factor TF Family: WRKY hypothetical protein POPTR_0008s09360g [Populus trichocarpa]
6 Hb_003025_150 0.109534177 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001123_170 0.1133008659 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004544_090 0.117066347 - - cytochrome P450, putative [Ricinus communis]
9 Hb_023386_050 0.1210752826 - - conserved hypothetical protein [Ricinus communis]
10 Hb_064047_010 0.1213869993 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002078_250 0.1224989455 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003106_180 0.124687988 - - Peroxidase 65 precursor, putative [Ricinus communis]
13 Hb_006052_060 0.1248113471 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
14 Hb_001699_050 0.1277286814 transcription factor TF Family: MYB hypothetical protein POPTR_0005s11410g [Populus trichocarpa]
15 Hb_002343_020 0.129525599 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
16 Hb_007894_030 0.1301278234 - - calcium-dependent protein kinase, putative [Ricinus communis]
17 Hb_064985_010 0.1319094363 - - Leucine-rich repeat transmembrane protein kinase, putative [Theobroma cacao]
18 Hb_017604_020 0.133558134 - - hypothetical protein JCGZ_22673 [Jatropha curcas]
19 Hb_050236_010 0.1337922121 - - hypothetical protein EUGRSUZ_E02960, partial [Eucalyptus grandis]
20 Hb_000977_090 0.1340460422 - - hypothetical protein POPTR_0010s18550g [Populus trichocarpa]

Gene co-expression network

sample Hb_002324_050 Hb_002324_050 Hb_003656_170 Hb_003656_170 Hb_002324_050--Hb_003656_170 Hb_002324_040 Hb_002324_040 Hb_002324_050--Hb_002324_040 Hb_004032_250 Hb_004032_250 Hb_002324_050--Hb_004032_250 Hb_003964_010 Hb_003964_010 Hb_002324_050--Hb_003964_010 Hb_003025_150 Hb_003025_150 Hb_002324_050--Hb_003025_150 Hb_001123_170 Hb_001123_170 Hb_002324_050--Hb_001123_170 Hb_003656_170--Hb_001123_170 Hb_002078_250 Hb_002078_250 Hb_003656_170--Hb_002078_250 Hb_003656_170--Hb_003964_010 Hb_004306_140 Hb_004306_140 Hb_003656_170--Hb_004306_140 Hb_050236_010 Hb_050236_010 Hb_003656_170--Hb_050236_010 Hb_002324_040--Hb_003025_150 Hb_012727_010 Hb_012727_010 Hb_002324_040--Hb_012727_010 Hb_003579_040 Hb_003579_040 Hb_002324_040--Hb_003579_040 Hb_064047_010 Hb_064047_010 Hb_002324_040--Hb_064047_010 Hb_002324_040--Hb_004032_250 Hb_001699_050 Hb_001699_050 Hb_004032_250--Hb_001699_050 Hb_004032_250--Hb_064047_010 Hb_004282_040 Hb_004282_040 Hb_004032_250--Hb_004282_040 Hb_010381_110 Hb_010381_110 Hb_004032_250--Hb_010381_110 Hb_003964_010--Hb_002078_250 Hb_005649_010 Hb_005649_010 Hb_003964_010--Hb_005649_010 Hb_064985_010 Hb_064985_010 Hb_003964_010--Hb_064985_010 Hb_002343_020 Hb_002343_020 Hb_003964_010--Hb_002343_020 Hb_003025_150--Hb_003579_040 Hb_003025_150--Hb_012727_010 Hb_003025_150--Hb_002078_250 Hb_003025_150--Hb_003656_170 Hb_001377_130 Hb_001377_130 Hb_001123_170--Hb_001377_130 Hb_004544_090 Hb_004544_090 Hb_001123_170--Hb_004544_090 Hb_000382_030 Hb_000382_030 Hb_001123_170--Hb_000382_030 Hb_000477_110 Hb_000477_110 Hb_001123_170--Hb_000477_110 Hb_001123_170--Hb_002078_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.07836 128.476 49.3925 88.0787 3.35485 1.34934
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.62553 2.44088 1.55354 64.6338 35.896

CAGE analysis