Hb_002325_020

Information

Type -
Description -
Location Contig2325: 13579-15253
Sequence    

Annotation

kegg
ID rcu:RCOM_0371840
description zinc finger protein, putative
nr
ID XP_002531921.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q9FHQ1
description GDSL esterase/lipase At5g37690 OS=Arabidopsis thaliana GN=At5g37690 PE=2 SV=1
trembl
ID B9T102
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0371840 PE=4 SV=1
Gene Ontology
ID GO:0016788
description gdsl esterase lipase at5g37690

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002325_020 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_003071_060 0.1208793168 - - PREDICTED: beta-galactosidase 15-like [Jatropha curcas]
3 Hb_000010_120 0.1406239241 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
4 Hb_006478_180 0.1503664276 - - Nonspecific lipid-transfer protein precursor, putative [Ricinus communis]
5 Hb_000025_020 0.1546023813 - - PREDICTED: cytochrome P450 71B34-like [Jatropha curcas]
6 Hb_003428_100 0.1682656641 - - Polygalacturonase precursor, putative [Ricinus communis]
7 Hb_011382_030 0.1711898635 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
8 Hb_112082_030 0.1746368485 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
9 Hb_002758_040 0.1758316887 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_002234_150 0.1858182613 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
11 Hb_006452_050 0.1876336064 - - PREDICTED: GABA transporter 1-like [Jatropha curcas]
12 Hb_005539_160 0.1892100348 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
13 Hb_002422_040 0.1901297193 - - hypothetical protein POPTR_0016s02350g [Populus trichocarpa]
14 Hb_000487_170 0.1919577229 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
15 Hb_000025_510 0.193159671 - - PREDICTED: receptor-like protein 12 [Vitis vinifera]
16 Hb_000522_040 0.1933556448 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
17 Hb_008406_010 0.1940262069 - - PREDICTED: tyrosine aminotransferase-like [Populus euphratica]
18 Hb_002890_400 0.194283322 - - 2-nitropropane dioxygenase precursor, putative [Ricinus communis]
19 Hb_000251_100 0.1962616541 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
20 Hb_000189_260 0.1964279631 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002325_020 Hb_002325_020 Hb_003071_060 Hb_003071_060 Hb_002325_020--Hb_003071_060 Hb_000010_120 Hb_000010_120 Hb_002325_020--Hb_000010_120 Hb_006478_180 Hb_006478_180 Hb_002325_020--Hb_006478_180 Hb_000025_020 Hb_000025_020 Hb_002325_020--Hb_000025_020 Hb_003428_100 Hb_003428_100 Hb_002325_020--Hb_003428_100 Hb_011382_030 Hb_011382_030 Hb_002325_020--Hb_011382_030 Hb_003071_060--Hb_006478_180 Hb_006452_050 Hb_006452_050 Hb_003071_060--Hb_006452_050 Hb_112082_030 Hb_112082_030 Hb_003071_060--Hb_112082_030 Hb_002960_170 Hb_002960_170 Hb_003071_060--Hb_002960_170 Hb_132880_030 Hb_132880_030 Hb_003071_060--Hb_132880_030 Hb_000010_120--Hb_006478_180 Hb_000007_110 Hb_000007_110 Hb_000010_120--Hb_000007_110 Hb_002758_040 Hb_002758_040 Hb_000010_120--Hb_002758_040 Hb_000010_120--Hb_011382_030 Hb_001999_220 Hb_001999_220 Hb_000010_120--Hb_001999_220 Hb_003538_020 Hb_003538_020 Hb_006478_180--Hb_003538_020 Hb_006478_180--Hb_002758_040 Hb_006478_180--Hb_132880_030 Hb_006478_180--Hb_112082_030 Hb_005511_050 Hb_005511_050 Hb_006478_180--Hb_005511_050 Hb_005539_160 Hb_005539_160 Hb_000025_020--Hb_005539_160 Hb_000025_020--Hb_000010_120 Hb_000556_110 Hb_000556_110 Hb_000025_020--Hb_000556_110 Hb_000025_020--Hb_003071_060 Hb_000025_020--Hb_006478_180 Hb_000204_030 Hb_000204_030 Hb_003428_100--Hb_000204_030 Hb_029510_110 Hb_029510_110 Hb_003428_100--Hb_029510_110 Hb_001104_200 Hb_001104_200 Hb_003428_100--Hb_001104_200 Hb_002046_100 Hb_002046_100 Hb_003428_100--Hb_002046_100 Hb_004143_120 Hb_004143_120 Hb_003428_100--Hb_004143_120 Hb_011382_030--Hb_002758_040 Hb_145535_010 Hb_145535_010 Hb_011382_030--Hb_145535_010 Hb_003446_030 Hb_003446_030 Hb_011382_030--Hb_003446_030 Hb_027402_120 Hb_027402_120 Hb_011382_030--Hb_027402_120 Hb_000141_210 Hb_000141_210 Hb_011382_030--Hb_000141_210 Hb_000160_230 Hb_000160_230 Hb_011382_030--Hb_000160_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0586587 0.802642 0.0809308 0.0873925 0.188563 0.11743
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.04127 0.129853 0 4.77391 0.134261

CAGE analysis