Hb_002325_040

Information

Type -
Description -
Location Contig2325: 29251-35451
Sequence    

Annotation

kegg
ID rcu:RCOM_0372170
description hypothetical protein
nr
ID XP_012086411.1
description PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K1W8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22506 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24439: 29216-35411 , PASA_asmbl_24440: 29216-35391
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002325_040 0.0 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]
2 Hb_002477_250 0.0535591162 - - DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus communis]
3 Hb_001135_120 0.0568512103 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
4 Hb_005542_050 0.0603813991 - - PREDICTED: LOW QUALITY PROTEIN: probable inactive serine/threonine-protein kinase scy1 [Prunus mume]
5 Hb_140049_040 0.0618952946 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
6 Hb_184798_080 0.0626076288 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
7 Hb_001147_110 0.0657678593 - - PREDICTED: dynamin-2A-like [Jatropha curcas]
8 Hb_003633_070 0.0663441555 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
9 Hb_002046_110 0.0665278339 - - PREDICTED: TBC1 domain family member 15 isoform X2 [Jatropha curcas]
10 Hb_003096_060 0.0677281771 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
11 Hb_004129_070 0.0694533166 - - PREDICTED: conserved oligomeric Golgi complex subunit 5 [Jatropha curcas]
12 Hb_000069_130 0.06982963 - - PREDICTED: uncharacterized protein LOC105642829 isoform X1 [Jatropha curcas]
13 Hb_008568_020 0.0702978218 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
14 Hb_002876_130 0.0703081172 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
15 Hb_000862_040 0.0718812507 - - ara4-interacting protein, putative [Ricinus communis]
16 Hb_002078_220 0.0726645795 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
17 Hb_154580_010 0.0728999665 - - hypothetical protein PRUPE_ppa002109mg [Prunus persica]
18 Hb_000076_160 0.0729776998 - - PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
19 Hb_001767_140 0.0730325171 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
20 Hb_003866_080 0.0731018465 - - PREDICTED: uncharacterized protein LOC105639150 [Jatropha curcas]

Gene co-expression network

sample Hb_002325_040 Hb_002325_040 Hb_002477_250 Hb_002477_250 Hb_002325_040--Hb_002477_250 Hb_001135_120 Hb_001135_120 Hb_002325_040--Hb_001135_120 Hb_005542_050 Hb_005542_050 Hb_002325_040--Hb_005542_050 Hb_140049_040 Hb_140049_040 Hb_002325_040--Hb_140049_040 Hb_184798_080 Hb_184798_080 Hb_002325_040--Hb_184798_080 Hb_001147_110 Hb_001147_110 Hb_002325_040--Hb_001147_110 Hb_000809_160 Hb_000809_160 Hb_002477_250--Hb_000809_160 Hb_001754_030 Hb_001754_030 Hb_002477_250--Hb_001754_030 Hb_003470_030 Hb_003470_030 Hb_002477_250--Hb_003470_030 Hb_000264_070 Hb_000264_070 Hb_002477_250--Hb_000264_070 Hb_002477_250--Hb_001135_120 Hb_004129_070 Hb_004129_070 Hb_001135_120--Hb_004129_070 Hb_009083_070 Hb_009083_070 Hb_001135_120--Hb_009083_070 Hb_003096_060 Hb_003096_060 Hb_001135_120--Hb_003096_060 Hb_001033_050 Hb_001033_050 Hb_001135_120--Hb_001033_050 Hb_001135_120--Hb_184798_080 Hb_010661_020 Hb_010661_020 Hb_005542_050--Hb_010661_020 Hb_000926_010 Hb_000926_010 Hb_005542_050--Hb_000926_010 Hb_000556_170 Hb_000556_170 Hb_005542_050--Hb_000556_170 Hb_010417_070 Hb_010417_070 Hb_005542_050--Hb_010417_070 Hb_005542_050--Hb_002477_250 Hb_000174_060 Hb_000174_060 Hb_140049_040--Hb_000174_060 Hb_000289_040 Hb_000289_040 Hb_140049_040--Hb_000289_040 Hb_001767_140 Hb_001767_140 Hb_140049_040--Hb_001767_140 Hb_002876_130 Hb_002876_130 Hb_140049_040--Hb_002876_130 Hb_000230_090 Hb_000230_090 Hb_140049_040--Hb_000230_090 Hb_001277_020 Hb_001277_020 Hb_140049_040--Hb_001277_020 Hb_184798_080--Hb_009083_070 Hb_184798_080--Hb_001147_110 Hb_184798_080--Hb_004129_070 Hb_002276_240 Hb_002276_240 Hb_184798_080--Hb_002276_240 Hb_000162_030 Hb_000162_030 Hb_001147_110--Hb_000162_030 Hb_008253_030 Hb_008253_030 Hb_001147_110--Hb_008253_030 Hb_001147_110--Hb_002276_240 Hb_001147_110--Hb_001767_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.7446 33.2673 23.0513 18.6168 21.6965 20.7761
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.8106 12.7198 10.9183 19.6663 11.8942

CAGE analysis