Hb_002325_050

Information

Type transcription factor
Description TF Family: MYB
Location Contig2325: 55860-58099
Sequence    

Annotation

kegg
ID pop:POPTR_0017s02850g
description myb family transcription factor family protein
nr
ID BAR45578.1
description MYB transcriptional factor [Populus nigra]
swissprot
ID Q50EX6
description Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1
trembl
ID U5FLU9
description Myb family transcription factor family protein OS=Populus trichocarpa GN=POPTR_0017s02850g PE=4 SV=1
Gene Ontology
ID GO:0003677
description protein odorant1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24441: 56023-57775
cDNA
(Sanger)
(ID:Location)		 053_G16.ab1: 56245-57775

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002325_050 0.0 transcription factor TF Family: MYB MYB transcriptional factor [Populus nigra]
2 Hb_008725_020 0.0829722883 - - PREDICTED: cytidine deaminase 1 [Jatropha curcas]
3 Hb_189034_010 0.0933440617 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_004659_100 0.0978916673 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001198_180 0.1019437767 - - RecName: Full=Anthocyanidin 3-O-glucosyltransferase 1; AltName: Full=Flavonol 3-O-glucosyltransferase 1; AltName: Full=UDP-glucose flavonoid 3-O-glucosyltransferase 1 [Manihot esculenta]
6 Hb_010642_010 0.1052756992 - - PREDICTED: aquaporin TIP2-1 [Jatropha curcas]
7 Hb_001562_030 0.1165481437 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH35 isoform X1 [Jatropha curcas]
8 Hb_002888_100 0.1177208543 - - PREDICTED: uncharacterized protein LOC103699074, partial [Phoenix dactylifera]
9 Hb_003849_200 0.1206490824 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
10 Hb_002897_030 0.120830079 - - PREDICTED: methylesterase 17 [Jatropha curcas]
11 Hb_002739_160 0.1211166367 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
12 Hb_028841_010 0.1212215361 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase CES101 [Jatropha curcas]
13 Hb_030827_080 0.1230423022 - - PREDICTED: uncharacterized protein LOC105648491 [Jatropha curcas]
14 Hb_000571_060 0.1244822335 - - PREDICTED: uncharacterized protein LOC105648112 [Jatropha curcas]
15 Hb_033053_020 0.1301035653 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
16 Hb_004631_100 0.1307645058 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH96 [Jatropha curcas]
17 Hb_038718_010 0.130911448 - - Disease resistance protein RFL1, putative [Ricinus communis]
18 Hb_004324_100 0.1310592356 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
19 Hb_183209_020 0.1315550324 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X2 [Jatropha curcas]
20 Hb_001048_070 0.1328623791 transcription factor TF Family: HB hypothetical protein POPTR_0007s14590g [Populus trichocarpa]

Gene co-expression network

sample Hb_002325_050 Hb_002325_050 Hb_008725_020 Hb_008725_020 Hb_002325_050--Hb_008725_020 Hb_189034_010 Hb_189034_010 Hb_002325_050--Hb_189034_010 Hb_004659_100 Hb_004659_100 Hb_002325_050--Hb_004659_100 Hb_001198_180 Hb_001198_180 Hb_002325_050--Hb_001198_180 Hb_010642_010 Hb_010642_010 Hb_002325_050--Hb_010642_010 Hb_001562_030 Hb_001562_030 Hb_002325_050--Hb_001562_030 Hb_003849_200 Hb_003849_200 Hb_008725_020--Hb_003849_200 Hb_008725_020--Hb_001562_030 Hb_001013_080 Hb_001013_080 Hb_008725_020--Hb_001013_080 Hb_008725_020--Hb_001198_180 Hb_000991_080 Hb_000991_080 Hb_008725_020--Hb_000991_080 Hb_000137_030 Hb_000137_030 Hb_189034_010--Hb_000137_030 Hb_002431_090 Hb_002431_090 Hb_189034_010--Hb_002431_090 Hb_005784_020 Hb_005784_020 Hb_189034_010--Hb_005784_020 Hb_183209_020 Hb_183209_020 Hb_189034_010--Hb_183209_020 Hb_050898_010 Hb_050898_010 Hb_189034_010--Hb_050898_010 Hb_033053_020 Hb_033053_020 Hb_004659_100--Hb_033053_020 Hb_009627_020 Hb_009627_020 Hb_004659_100--Hb_009627_020 Hb_002897_030 Hb_002897_030 Hb_004659_100--Hb_002897_030 Hb_024868_010 Hb_024868_010 Hb_004659_100--Hb_024868_010 Hb_009838_120 Hb_009838_120 Hb_004659_100--Hb_009838_120 Hb_001198_180--Hb_001562_030 Hb_030827_080 Hb_030827_080 Hb_001198_180--Hb_030827_080 Hb_001198_180--Hb_002897_030 Hb_002739_160 Hb_002739_160 Hb_001198_180--Hb_002739_160 Hb_011355_020 Hb_011355_020 Hb_001198_180--Hb_011355_020 Hb_010642_010--Hb_030827_080 Hb_010642_010--Hb_002739_160 Hb_008352_020 Hb_008352_020 Hb_010642_010--Hb_008352_020 Hb_038718_010 Hb_038718_010 Hb_010642_010--Hb_038718_010 Hb_003939_090 Hb_003939_090 Hb_010642_010--Hb_003939_090 Hb_010642_010--Hb_001198_180 Hb_002888_100 Hb_002888_100 Hb_001562_030--Hb_002888_100 Hb_001562_030--Hb_002739_160 Hb_092975_010 Hb_092975_010 Hb_001562_030--Hb_092975_010 Hb_001562_030--Hb_030827_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 7.95899 4.35989 11.7175 0.0328623 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0630105 0 3.83592 1.63102

CAGE analysis