Hb_002325_070

Information

Type -
Description -
Location Contig2325: 70638-74163
Sequence    

Annotation

kegg
ID rcu:RCOM_0060310
description ATP binding protein, putative (EC:1.3.1.74 2.7.11.26)
nr
ID XP_002531014.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q9LP77
description Probable inactive receptor kinase At1g48480 OS=Arabidopsis thaliana GN=RKL1 PE=2 SV=1
trembl
ID B9SYE5
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0060310 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable inactive receptor kinase at1g48480

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24446: 70706-73989
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002325_070 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_010883_190 0.1068032267 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002344_100 0.1068649053 - - PREDICTED: cation/calcium exchanger 4-like [Jatropha curcas]
4 Hb_003911_020 0.1258593266 - - PREDICTED: uncharacterized protein LOC105121332 [Populus euphratica]
5 Hb_000704_040 0.1313481646 - - aquaporin sip2.1, putative [Ricinus communis]
6 Hb_002639_020 0.1369417339 - - PREDICTED: probable alpha-amylase 2 [Jatropha curcas]
7 Hb_000679_230 0.1390487329 - - PREDICTED: serine/threonine-protein kinase PRP4 homolog [Jatropha curcas]
8 Hb_008053_050 0.1431558599 - - PREDICTED: uncharacterized protein LOC105642980 isoform X2 [Jatropha curcas]
9 Hb_001946_180 0.143999984 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000946_110 0.1521238107 - - GTP cyclohydrolase I, putative [Ricinus communis]
11 Hb_002289_060 0.1534207974 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001999_100 0.1543055209 - - PREDICTED: UDP-glycosyltransferase 71D1-like [Jatropha curcas]
13 Hb_001842_010 0.1546020492 - - serine/threonine protein kinase, putative [Ricinus communis]
14 Hb_001486_190 0.156538741 - - hypothetical protein JCGZ_02702 [Jatropha curcas]
15 Hb_000656_310 0.1573590794 - - PREDICTED: cation/calcium exchanger 4-like [Jatropha curcas]
16 Hb_000413_020 0.1576581176 - - PREDICTED: U-box domain-containing protein 8 [Jatropha curcas]
17 Hb_113818_010 0.1580130278 - - Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis]
18 Hb_008699_030 0.160681301 - - hypothetical protein CISIN_1g017963mg [Citrus sinensis]
19 Hb_138585_080 0.1614440486 - - PREDICTED: uncharacterized protein LOC105648741 [Jatropha curcas]
20 Hb_003994_300 0.1621843234 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002325_070 Hb_002325_070 Hb_010883_190 Hb_010883_190 Hb_002325_070--Hb_010883_190 Hb_002344_100 Hb_002344_100 Hb_002325_070--Hb_002344_100 Hb_003911_020 Hb_003911_020 Hb_002325_070--Hb_003911_020 Hb_000704_040 Hb_000704_040 Hb_002325_070--Hb_000704_040 Hb_002639_020 Hb_002639_020 Hb_002325_070--Hb_002639_020 Hb_000679_230 Hb_000679_230 Hb_002325_070--Hb_000679_230 Hb_001946_050 Hb_001946_050 Hb_010883_190--Hb_001946_050 Hb_000590_120 Hb_000590_120 Hb_010883_190--Hb_000590_120 Hb_000656_310 Hb_000656_310 Hb_010883_190--Hb_000656_310 Hb_001080_300 Hb_001080_300 Hb_010883_190--Hb_001080_300 Hb_010883_190--Hb_000704_040 Hb_002344_100--Hb_000679_230 Hb_002344_100--Hb_000704_040 Hb_006469_070 Hb_006469_070 Hb_002344_100--Hb_006469_070 Hb_000413_020 Hb_000413_020 Hb_002344_100--Hb_000413_020 Hb_000984_310 Hb_000984_310 Hb_002344_100--Hb_000984_310 Hb_003911_020--Hb_000679_230 Hb_001609_040 Hb_001609_040 Hb_003911_020--Hb_001609_040 Hb_003052_180 Hb_003052_180 Hb_003911_020--Hb_003052_180 Hb_113818_010 Hb_113818_010 Hb_003911_020--Hb_113818_010 Hb_000107_110 Hb_000107_110 Hb_003911_020--Hb_000107_110 Hb_000928_190 Hb_000928_190 Hb_000704_040--Hb_000928_190 Hb_033152_070 Hb_033152_070 Hb_000704_040--Hb_033152_070 Hb_000243_350 Hb_000243_350 Hb_000704_040--Hb_000243_350 Hb_009898_040 Hb_009898_040 Hb_000704_040--Hb_009898_040 Hb_001999_100 Hb_001999_100 Hb_002639_020--Hb_001999_100 Hb_002217_500 Hb_002217_500 Hb_002639_020--Hb_002217_500 Hb_005489_150 Hb_005489_150 Hb_002639_020--Hb_005489_150 Hb_002639_020--Hb_002344_100 Hb_001474_020 Hb_001474_020 Hb_002639_020--Hb_001474_020 Hb_007153_050 Hb_007153_050 Hb_000679_230--Hb_007153_050 Hb_002289_060 Hb_002289_060 Hb_000679_230--Hb_002289_060 Hb_001946_180 Hb_001946_180 Hb_000679_230--Hb_001946_180 Hb_001842_010 Hb_001842_010 Hb_000679_230--Hb_001842_010 Hb_000679_230--Hb_003052_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.3744 21.1897 8.34547 64.9937 6.63156 11.5435
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.0466 10.9476 25.5776 10.5433 36.3796

CAGE analysis