Hb_002326_010

Information

Type transcription factor
Description TF Family: G2-like
Location Contig2326: 24652-27794
Sequence    

Annotation

kegg
ID rcu:RCOM_1592640
description hypothetical protein
nr
ID XP_002510296.1
description hypothetical protein RCOM_1592640 [Ricinus communis]
swissprot
ID Q9FJV5
description Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1
trembl
ID B9R7K3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1592640 PE=4 SV=1
Gene Ontology
ID GO:0003677
description probable transcription factor kan4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24448: 26334-27029 , PASA_asmbl_24449: 27195-27685
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002326_010 0.0 transcription factor TF Family: G2-like hypothetical protein RCOM_1592640 [Ricinus communis]
2 Hb_000224_190 0.023147224 - - zinc finger protein, putative [Ricinus communis]
3 Hb_064445_020 0.0259309604 - - PREDICTED: serine carboxypeptidase-like 34 [Populus euphratica]
4 Hb_008453_050 0.0265268339 - - PREDICTED: peroxidase 64 [Jatropha curcas]
5 Hb_001593_040 0.0294407224 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
6 Hb_154038_010 0.0311953784 - - cytochrome P450, putative [Ricinus communis]
7 Hb_072771_010 0.0377581894 - - Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis]
8 Hb_001345_050 0.038930838 - - hypothetical protein POPTR_0014s14480g [Populus trichocarpa]
9 Hb_006483_040 0.0459285184 - - PREDICTED: uncharacterized protein LOC105639715 [Jatropha curcas]
10 Hb_001926_080 0.0482111689 - - PREDICTED: uncharacterized protein LOC103454919 [Malus domestica]
11 Hb_002391_010 0.0564247824 - - PREDICTED: probable acyl-activating enzyme 1, peroxisomal [Jatropha curcas]
12 Hb_003025_170 0.0584274804 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
13 Hb_001863_470 0.0603926727 - - PREDICTED: uncharacterized protein LOC105630613 [Jatropha curcas]
14 Hb_000077_040 0.0636099345 - - PREDICTED: O-acyltransferase WSD1-like [Jatropha curcas]
15 Hb_104014_020 0.0650407317 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]
16 Hb_132880_010 0.0675672195 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
17 Hb_001472_150 0.0676066388 - - PREDICTED: cytochrome P450 86A7 [Jatropha curcas]
18 Hb_005839_040 0.0689682822 - - hypothetical protein POPTR_0019s08420g [Populus trichocarpa]
19 Hb_000485_100 0.0717828727 - - PREDICTED: putative UPF0481 protein At3g02645 [Populus euphratica]
20 Hb_000115_030 0.0781662072 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 42 [Jatropha curcas]

Gene co-expression network

sample Hb_002326_010 Hb_002326_010 Hb_000224_190 Hb_000224_190 Hb_002326_010--Hb_000224_190 Hb_064445_020 Hb_064445_020 Hb_002326_010--Hb_064445_020 Hb_008453_050 Hb_008453_050 Hb_002326_010--Hb_008453_050 Hb_001593_040 Hb_001593_040 Hb_002326_010--Hb_001593_040 Hb_154038_010 Hb_154038_010 Hb_002326_010--Hb_154038_010 Hb_072771_010 Hb_072771_010 Hb_002326_010--Hb_072771_010 Hb_001926_080 Hb_001926_080 Hb_000224_190--Hb_001926_080 Hb_002391_010 Hb_002391_010 Hb_000224_190--Hb_002391_010 Hb_000224_190--Hb_072771_010 Hb_001345_050 Hb_001345_050 Hb_000224_190--Hb_001345_050 Hb_000224_190--Hb_008453_050 Hb_064445_020--Hb_001593_040 Hb_064445_020--Hb_154038_010 Hb_064445_020--Hb_008453_050 Hb_006483_040 Hb_006483_040 Hb_064445_020--Hb_006483_040 Hb_064445_020--Hb_000224_190 Hb_008453_050--Hb_154038_010 Hb_008453_050--Hb_006483_040 Hb_008453_050--Hb_072771_010 Hb_008453_050--Hb_001345_050 Hb_001593_040--Hb_008453_050 Hb_000077_040 Hb_000077_040 Hb_001593_040--Hb_000077_040 Hb_001593_040--Hb_154038_010 Hb_104014_020 Hb_104014_020 Hb_001593_040--Hb_104014_020 Hb_154038_010--Hb_006483_040 Hb_154038_010--Hb_072771_010 Hb_154038_010--Hb_001345_050 Hb_072771_010--Hb_001345_050 Hb_072771_010--Hb_001926_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.629256 1.41682 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.92614

CAGE analysis