Hb_002326_020

Information

Type -
Description -
Location Contig2326: 35067-38453
Sequence    

Annotation

kegg
ID pop:POPTR_0002s13160g
description POPTRDRAFT_816497; hypothetical protein
nr
ID XP_002302451.1
description hypothetical protein POPTR_0002s13160g [Populus trichocarpa]
swissprot
ID Q6DFI2
description Transmembrane protein 147 OS=Xenopus laevis GN=tmem147 PE=2 SV=1
trembl
ID A9P9X3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s13160g PE=2 SV=1
Gene Ontology
ID GO:0005739
description transmembrane protein 147

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24450: 35107-38370
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002326_020 0.0 - - hypothetical protein POPTR_0002s13160g [Populus trichocarpa]
2 Hb_000258_120 0.0627636473 - - PREDICTED: uncharacterized protein LOC105630440 [Jatropha curcas]
3 Hb_003680_230 0.081115905 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
4 Hb_000331_160 0.0837147532 - - adenylate kinase 1 chloroplast, putative [Ricinus communis]
5 Hb_009252_100 0.0848677814 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
6 Hb_006816_050 0.0853067254 - - PREDICTED: RNA polymerase II-associated protein 3 isoform X4 [Jatropha curcas]
7 Hb_004635_050 0.0859127959 - - nucleolar phosphoprotein, putative [Ricinus communis]
8 Hb_000953_030 0.0862157253 transcription factor TF Family: HSF DNA binding protein, putative [Ricinus communis]
9 Hb_000406_240 0.0898475644 - - PREDICTED: double-stranded RNA-binding protein 2-like [Jatropha curcas]
10 Hb_000457_050 0.0915297818 - - PREDICTED: tether containing UBX domain for GLUT4 [Jatropha curcas]
11 Hb_000261_220 0.0916716396 - - PREDICTED: TBC1 domain family member 13 [Jatropha curcas]
12 Hb_000116_060 0.0930720693 - - plant ubiquilin, putative [Ricinus communis]
13 Hb_002043_090 0.093437986 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
14 Hb_000283_130 0.0941548913 - - PREDICTED: PRA1 family protein E-like [Populus euphratica]
15 Hb_011386_040 0.0951406486 - - PREDICTED: uncharacterized protein LOC105639243 isoform X2 [Jatropha curcas]
16 Hb_005883_010 0.0977286124 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000152_340 0.097976684 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
18 Hb_001357_380 0.0984202294 - - PREDICTED: probable tetraacyldisaccharide 4'-kinase, mitochondrial isoform X1 [Jatropha curcas]
19 Hb_000594_040 0.1010289972 - - hypothetical protein L484_013922 [Morus notabilis]
20 Hb_002045_150 0.1017761037 - - histone acetyltransferase gcn5, putative [Ricinus communis]

Gene co-expression network

sample Hb_002326_020 Hb_002326_020 Hb_000258_120 Hb_000258_120 Hb_002326_020--Hb_000258_120 Hb_003680_230 Hb_003680_230 Hb_002326_020--Hb_003680_230 Hb_000331_160 Hb_000331_160 Hb_002326_020--Hb_000331_160 Hb_009252_100 Hb_009252_100 Hb_002326_020--Hb_009252_100 Hb_006816_050 Hb_006816_050 Hb_002326_020--Hb_006816_050 Hb_004635_050 Hb_004635_050 Hb_002326_020--Hb_004635_050 Hb_000034_160 Hb_000034_160 Hb_000258_120--Hb_000034_160 Hb_001662_030 Hb_001662_030 Hb_000258_120--Hb_001662_030 Hb_031527_090 Hb_031527_090 Hb_000258_120--Hb_031527_090 Hb_000283_130 Hb_000283_130 Hb_000258_120--Hb_000283_130 Hb_000457_050 Hb_000457_050 Hb_000258_120--Hb_000457_050 Hb_007558_120 Hb_007558_120 Hb_003680_230--Hb_007558_120 Hb_000116_060 Hb_000116_060 Hb_003680_230--Hb_000116_060 Hb_003680_230--Hb_006816_050 Hb_002942_050 Hb_002942_050 Hb_003680_230--Hb_002942_050 Hb_005188_060 Hb_005188_060 Hb_003680_230--Hb_005188_060 Hb_007943_120 Hb_007943_120 Hb_003680_230--Hb_007943_120 Hb_000640_020 Hb_000640_020 Hb_000331_160--Hb_000640_020 Hb_032202_240 Hb_032202_240 Hb_000331_160--Hb_032202_240 Hb_023020_060 Hb_023020_060 Hb_000331_160--Hb_023020_060 Hb_001492_010 Hb_001492_010 Hb_000331_160--Hb_001492_010 Hb_000504_160 Hb_000504_160 Hb_000331_160--Hb_000504_160 Hb_001040_040 Hb_001040_040 Hb_009252_100--Hb_001040_040 Hb_001083_050 Hb_001083_050 Hb_009252_100--Hb_001083_050 Hb_106552_050 Hb_106552_050 Hb_009252_100--Hb_106552_050 Hb_000477_030 Hb_000477_030 Hb_009252_100--Hb_000477_030 Hb_001357_380 Hb_001357_380 Hb_009252_100--Hb_001357_380 Hb_000291_060 Hb_000291_060 Hb_006816_050--Hb_000291_060 Hb_006816_050--Hb_007558_120 Hb_001143_180 Hb_001143_180 Hb_006816_050--Hb_001143_180 Hb_154114_010 Hb_154114_010 Hb_006816_050--Hb_154114_010 Hb_131646_010 Hb_131646_010 Hb_006816_050--Hb_131646_010 Hb_004635_050--Hb_007943_120 Hb_004635_050--Hb_007558_120 Hb_033883_060 Hb_033883_060 Hb_004635_050--Hb_033883_060 Hb_003777_160 Hb_003777_160 Hb_004635_050--Hb_003777_160 Hb_005883_010 Hb_005883_010 Hb_004635_050--Hb_005883_010 Hb_019153_020 Hb_019153_020 Hb_004635_050--Hb_019153_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
100.875 98.7417 64.346 47.16 107.233 80.1
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
64.9273 37.585 27.3447 42.9468 15.207

CAGE analysis