Hb_002326_060

Information

Type -
Description -
Location Contig2326: 70988-73309
Sequence    

Annotation

kegg
ID pop:POPTR_0014s03600g
description hypothetical protein
nr
ID XP_011030760.1
description PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Populus euphratica]
swissprot
ID Q9LJ64
description Pollen-specific leucine-rich repeat extensin-like protein 1 OS=Arabidopsis thaliana GN=PEX1 PE=2 SV=1
trembl
ID U5FU21
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s03600g PE=4 SV=1
Gene Ontology
ID GO:0005634
description pollen-specific leucine-rich repeat extensin-like protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002326_060 0.0 - - PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Populus euphratica]
2 Hb_001159_210 0.1516615954 - - PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
3 Hb_134732_010 0.1854204953 - - -
4 Hb_000176_060 0.1884590236 - - unnamed protein product [Vitis vinifera]
5 Hb_000001_160 0.1893312077 - - PREDICTED: probable glutamate carboxypeptidase 2 isoform X2 [Jatropha curcas]
6 Hb_001935_190 0.1989478848 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
7 Hb_000038_150 0.1990921639 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 homolog [Jatropha curcas]
8 Hb_027255_010 0.2042346934 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
9 Hb_003043_060 0.2045999244 - - -
10 Hb_000853_290 0.2073673794 - - PREDICTED: uncharacterized protein LOC105642585 [Jatropha curcas]
11 Hb_001741_100 0.2104894115 rubber biosynthesis Gene Name: REF6 unnamed protein product [Vitis vinifera]
12 Hb_002374_560 0.2148345221 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH11-like [Populus euphratica]
13 Hb_120662_010 0.2179183487 - - hypothetical protein POPTR_0006s18790g [Populus trichocarpa]
14 Hb_004460_020 0.2216112995 - - chaperone protein DNAj, putative [Ricinus communis]
15 Hb_047661_010 0.2232042489 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
16 Hb_005568_070 0.2246731611 - - PREDICTED: protein NRT1/ PTR FAMILY 2.6-like [Gossypium raimondii]
17 Hb_000018_160 0.2251360745 - - nitrate transporter, putative [Ricinus communis]
18 Hb_000619_070 0.225900119 - - PREDICTED: DNA mismatch repair protein MLH1 [Jatropha curcas]
19 Hb_000211_080 0.2262497452 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
20 Hb_077211_010 0.2343017655 - - PREDICTED: lariat debranching enzyme-like [Jatropha curcas]

Gene co-expression network

sample Hb_002326_060 Hb_002326_060 Hb_001159_210 Hb_001159_210 Hb_002326_060--Hb_001159_210 Hb_134732_010 Hb_134732_010 Hb_002326_060--Hb_134732_010 Hb_000176_060 Hb_000176_060 Hb_002326_060--Hb_000176_060 Hb_000001_160 Hb_000001_160 Hb_002326_060--Hb_000001_160 Hb_001935_190 Hb_001935_190 Hb_002326_060--Hb_001935_190 Hb_000038_150 Hb_000038_150 Hb_002326_060--Hb_000038_150 Hb_001159_210--Hb_000038_150 Hb_001159_210--Hb_134732_010 Hb_047661_010 Hb_047661_010 Hb_001159_210--Hb_047661_010 Hb_004460_020 Hb_004460_020 Hb_001159_210--Hb_004460_020 Hb_003320_030 Hb_003320_030 Hb_001159_210--Hb_003320_030 Hb_134732_010--Hb_000038_150 Hb_005116_020 Hb_005116_020 Hb_134732_010--Hb_005116_020 Hb_134732_010--Hb_003320_030 Hb_156144_020 Hb_156144_020 Hb_134732_010--Hb_156144_020 Hb_000200_060 Hb_000200_060 Hb_134732_010--Hb_000200_060 Hb_022452_010 Hb_022452_010 Hb_000176_060--Hb_022452_010 Hb_000205_070 Hb_000205_070 Hb_000176_060--Hb_000205_070 Hb_001276_010 Hb_001276_010 Hb_000176_060--Hb_001276_010 Hb_004631_160 Hb_004631_160 Hb_000176_060--Hb_004631_160 Hb_000176_060--Hb_134732_010 Hb_003043_060 Hb_003043_060 Hb_000001_160--Hb_003043_060 Hb_003243_020 Hb_003243_020 Hb_000001_160--Hb_003243_020 Hb_030627_040 Hb_030627_040 Hb_000001_160--Hb_030627_040 Hb_012340_020 Hb_012340_020 Hb_000001_160--Hb_012340_020 Hb_002518_300 Hb_002518_300 Hb_000001_160--Hb_002518_300 Hb_120662_010 Hb_120662_010 Hb_001935_190--Hb_120662_010 Hb_001916_120 Hb_001916_120 Hb_001935_190--Hb_001916_120 Hb_001916_060 Hb_001916_060 Hb_001935_190--Hb_001916_060 Hb_000329_420 Hb_000329_420 Hb_001935_190--Hb_000329_420 Hb_000792_110 Hb_000792_110 Hb_001935_190--Hb_000792_110 Hb_000252_090 Hb_000252_090 Hb_001935_190--Hb_000252_090 Hb_045502_010 Hb_045502_010 Hb_000038_150--Hb_045502_010 Hb_035360_010 Hb_035360_010 Hb_000038_150--Hb_035360_010 Hb_000619_070 Hb_000619_070 Hb_000038_150--Hb_000619_070 Hb_000038_150--Hb_004460_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.729954 0.276864 0.00625117 0.23392 1.93295 1.61511
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0191485 0.0150673 0.0860341 0.01796 0.0319714

CAGE analysis