Hb_002326_080

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig2326: 83527-84240
Sequence    

Annotation

kegg
ID rcu:RCOM_1592450
description zinc finger protein, putative
nr
ID XP_012071724.1
description PREDICTED: dof zinc finger protein DOF1.6 [Jatropha curcas]
swissprot
ID Q39088
description Dof zinc finger protein DOF3.4 OS=Arabidopsis thaliana GN=DOF3.4 PE=1 SV=2
trembl
ID A0A067KQJ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04337 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dof zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24465: 83722-84011
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002326_080 0.0 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.6 [Jatropha curcas]
2 Hb_003299_010 0.1705236961 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
3 Hb_000429_110 0.1733176275 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2-like [Populus euphratica]
4 Hb_140848_010 0.174424272 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
5 Hb_164010_090 0.1774140922 - - cellulose synthase, putative [Ricinus communis]
6 Hb_001558_070 0.177800693 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
7 Hb_005380_030 0.1814796396 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase B120 isoform X2 [Jatropha curcas]
8 Hb_004837_170 0.1838448521 - - PREDICTED: uncharacterized protein LOC105648284 [Jatropha curcas]
9 Hb_000762_070 0.189242394 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
10 Hb_005380_040 0.1898888226 - - hypothetical protein PRUPE_ppa015877mg, partial [Prunus persica]
11 Hb_000685_060 0.1930964554 - - ring finger protein, putative [Ricinus communis]
12 Hb_000844_010 0.1937846922 - - PREDICTED: lysine histidine transporter-like 8 [Jatropha curcas]
13 Hb_001148_040 0.200030921 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
14 Hb_004341_010 0.2012058538 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
15 Hb_101089_010 0.201476883 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
16 Hb_000189_120 0.2018361377 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like isoform X5 [Jatropha curcas]
17 Hb_000608_020 0.2077486615 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
18 Hb_011218_050 0.211679159 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
19 Hb_003504_040 0.2124361625 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 2-like [Jatropha curcas]
20 Hb_001863_100 0.2133347544 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002326_080 Hb_002326_080 Hb_003299_010 Hb_003299_010 Hb_002326_080--Hb_003299_010 Hb_000429_110 Hb_000429_110 Hb_002326_080--Hb_000429_110 Hb_140848_010 Hb_140848_010 Hb_002326_080--Hb_140848_010 Hb_164010_090 Hb_164010_090 Hb_002326_080--Hb_164010_090 Hb_001558_070 Hb_001558_070 Hb_002326_080--Hb_001558_070 Hb_005380_030 Hb_005380_030 Hb_002326_080--Hb_005380_030 Hb_005157_010 Hb_005157_010 Hb_003299_010--Hb_005157_010 Hb_000685_060 Hb_000685_060 Hb_003299_010--Hb_000685_060 Hb_000189_120 Hb_000189_120 Hb_003299_010--Hb_000189_120 Hb_001584_010 Hb_001584_010 Hb_003299_010--Hb_001584_010 Hb_003504_040 Hb_003504_040 Hb_003299_010--Hb_003504_040 Hb_133636_010 Hb_133636_010 Hb_003299_010--Hb_133636_010 Hb_002928_180 Hb_002928_180 Hb_000429_110--Hb_002928_180 Hb_052764_080 Hb_052764_080 Hb_000429_110--Hb_052764_080 Hb_001259_100 Hb_001259_100 Hb_000429_110--Hb_001259_100 Hb_002928_120 Hb_002928_120 Hb_000429_110--Hb_002928_120 Hb_010174_190 Hb_010174_190 Hb_000429_110--Hb_010174_190 Hb_001355_070 Hb_001355_070 Hb_000429_110--Hb_001355_070 Hb_002735_010 Hb_002735_010 Hb_140848_010--Hb_002735_010 Hb_001148_040 Hb_001148_040 Hb_140848_010--Hb_001148_040 Hb_015473_010 Hb_015473_010 Hb_140848_010--Hb_015473_010 Hb_002053_090 Hb_002053_090 Hb_140848_010--Hb_002053_090 Hb_000152_250 Hb_000152_250 Hb_140848_010--Hb_000152_250 Hb_002110_210 Hb_002110_210 Hb_140848_010--Hb_002110_210 Hb_000141_220 Hb_000141_220 Hb_164010_090--Hb_000141_220 Hb_004195_170 Hb_004195_170 Hb_164010_090--Hb_004195_170 Hb_005380_040 Hb_005380_040 Hb_164010_090--Hb_005380_040 Hb_017866_020 Hb_017866_020 Hb_164010_090--Hb_017866_020 Hb_000589_180 Hb_000589_180 Hb_164010_090--Hb_000589_180 Hb_000844_010 Hb_000844_010 Hb_164010_090--Hb_000844_010 Hb_001862_170 Hb_001862_170 Hb_001558_070--Hb_001862_170 Hb_000608_020 Hb_000608_020 Hb_001558_070--Hb_000608_020 Hb_001454_360 Hb_001454_360 Hb_001558_070--Hb_001454_360 Hb_001558_070--Hb_000429_110 Hb_008948_060 Hb_008948_060 Hb_001558_070--Hb_008948_060 Hb_073171_010 Hb_073171_010 Hb_001558_070--Hb_073171_010 Hb_000703_320 Hb_000703_320 Hb_005380_030--Hb_000703_320 Hb_005380_030--Hb_002110_210 Hb_002241_020 Hb_002241_020 Hb_005380_030--Hb_002241_020 Hb_005147_020 Hb_005147_020 Hb_005380_030--Hb_005147_020 Hb_002248_090 Hb_002248_090 Hb_005380_030--Hb_002248_090 Hb_005380_030--Hb_002735_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.788787 29.4969 0.555453 15.5676 0.521179 2.56365
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.865853 1.7327 0.331993 18.0374 0.490737

CAGE analysis