Hb_002326_160

Information

Type -
Description -
Location Contig2326: 143739-147051
Sequence    

Annotation

kegg
ID rcu:RCOM_1592100
description nitrate transporter, putative
nr
ID KDP38407.1
description hypothetical protein JCGZ_04332 [Jatropha curcas]
swissprot
ID Q8VYE4
description Protein NRT1/ PTR FAMILY 4.5 OS=Arabidopsis thaliana GN=NPF4.5 PE=2 SV=1
trembl
ID A0A067KQJ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04332 PE=4 SV=1
Gene Ontology
ID GO:0016020
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002326_160 0.0 - - hypothetical protein JCGZ_04332 [Jatropha curcas]
2 Hb_150093_010 0.0001744832 - - putative polyprotein [Oryza sativa Japonica Group]
3 Hb_001240_030 0.0003691624 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
4 Hb_188247_020 0.0004008878 - - hypothetical protein, partial [Cecembia lonarensis]
5 Hb_000518_010 0.0006160447 transcription factor TF Family: MYB hypothetical protein POPTR_0010s17300g [Populus trichocarpa]
6 Hb_001900_040 0.0007385818 - - PREDICTED: uncharacterized protein LOC105049010 [Elaeis guineensis]
7 Hb_163720_010 0.0023174981 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
8 Hb_073174_010 0.0030485766 - - PREDICTED: MLP-like protein 328 [Jatropha curcas]
9 Hb_000329_240 0.0032860338 transcription factor TF Family: PLATZ zinc ion binding protein, putative [Ricinus communis]
10 Hb_011444_050 0.0038009833 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
11 Hb_000696_180 0.0068029464 - - cysteine protease, putative [Ricinus communis]
12 Hb_159542_010 0.0082526764 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
13 Hb_000938_010 0.0107723052 - - polyprotein [Oryza australiensis]
14 Hb_000349_130 0.0119050826 - - hypothetical protein JCGZ_06349 [Jatropha curcas]
15 Hb_071079_030 0.0120239968 transcription factor TF Family: MYB-related PREDICTED: transcription factor TRY-like [Populus euphratica]
16 Hb_001031_070 0.0124119204 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase CES101 [Jatropha curcas]
17 Hb_000441_240 0.0126037606 - - hypothetical protein ZEAMMB73_005804 [Zea mays]
18 Hb_003687_050 0.01314784 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002596_100 0.0132860056 - - -
20 Hb_001031_100 0.0143390891 - - -

Gene co-expression network

sample Hb_002326_160 Hb_002326_160 Hb_150093_010 Hb_150093_010 Hb_002326_160--Hb_150093_010 Hb_001240_030 Hb_001240_030 Hb_002326_160--Hb_001240_030 Hb_188247_020 Hb_188247_020 Hb_002326_160--Hb_188247_020 Hb_000518_010 Hb_000518_010 Hb_002326_160--Hb_000518_010 Hb_001900_040 Hb_001900_040 Hb_002326_160--Hb_001900_040 Hb_163720_010 Hb_163720_010 Hb_002326_160--Hb_163720_010 Hb_150093_010--Hb_188247_020 Hb_150093_010--Hb_000518_010 Hb_150093_010--Hb_001240_030 Hb_150093_010--Hb_001900_040 Hb_150093_010--Hb_163720_010 Hb_001240_030--Hb_188247_020 Hb_001240_030--Hb_000518_010 Hb_001240_030--Hb_001900_040 Hb_001240_030--Hb_163720_010 Hb_188247_020--Hb_000518_010 Hb_188247_020--Hb_001900_040 Hb_188247_020--Hb_163720_010 Hb_000518_010--Hb_001900_040 Hb_000518_010--Hb_163720_010 Hb_001900_040--Hb_163720_010 Hb_073174_010 Hb_073174_010 Hb_163720_010--Hb_073174_010 Hb_000329_240 Hb_000329_240 Hb_163720_010--Hb_000329_240 Hb_011444_050 Hb_011444_050 Hb_163720_010--Hb_011444_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0334489 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0304375 0

CAGE analysis