Hb_002326_170

Information

Type -
Description -
Location Contig2326: 149012-151274
Sequence    

Annotation

kegg
ID rcu:RCOM_1591990
description Protein Z, putative (EC:2.7.11.1)
nr
ID XP_002510281.1
description Protein Z, putative [Ricinus communis]
swissprot
ID Q9S7T8
description Serpin-ZX OS=Arabidopsis thaliana GN=At1g47710 PE=1 SV=1
trembl
ID B9R7I8
description Protein Z, putative OS=Ricinus communis GN=RCOM_1591990 PE=3 SV=1
Gene Ontology
ID GO:0003824
description serine protease inhibitor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24469: 149113-149506 , PASA_asmbl_24470: 150848-151385
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002326_170 0.0 - - Protein Z, putative [Ricinus communis]
2 Hb_002045_200 0.105590875 - - PREDICTED: beta-carotene isomerase D27, chloroplastic [Jatropha curcas]
3 Hb_001425_050 0.1504075575 - - -
4 Hb_001276_060 0.1555393833 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
5 Hb_008864_060 0.1752432397 - - PREDICTED: uncharacterized protein LOC105634361 [Jatropha curcas]
6 Hb_001425_070 0.1796080777 - - -
7 Hb_001902_120 0.1831729093 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
8 Hb_052941_010 0.186241926 - - PREDICTED: probable peroxidase 61 [Jatropha curcas]
9 Hb_000387_060 0.1902760542 - - -
10 Hb_005568_010 0.1918281624 - - -
11 Hb_023051_020 0.1921852626 - - -
12 Hb_002450_070 0.193799941 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
13 Hb_113635_010 0.1940280084 - - -
14 Hb_001425_060 0.1948055121 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001959_260 0.1969042438 - - -
16 Hb_000720_190 0.197826318 - - unknown [Populus trichocarpa x Populus deltoides]
17 Hb_027346_020 0.1995440487 - - -
18 Hb_088538_010 0.2003584888 - - hypothetical protein JCGZ_12177 [Jatropha curcas]
19 Hb_000613_160 0.2030322324 - - coated vesicle membrane protein, putative [Ricinus communis]
20 Hb_003211_050 0.2031030108 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002326_170 Hb_002326_170 Hb_002045_200 Hb_002045_200 Hb_002326_170--Hb_002045_200 Hb_001425_050 Hb_001425_050 Hb_002326_170--Hb_001425_050 Hb_001276_060 Hb_001276_060 Hb_002326_170--Hb_001276_060 Hb_008864_060 Hb_008864_060 Hb_002326_170--Hb_008864_060 Hb_001425_070 Hb_001425_070 Hb_002326_170--Hb_001425_070 Hb_001902_120 Hb_001902_120 Hb_002326_170--Hb_001902_120 Hb_002045_200--Hb_001902_120 Hb_052941_010 Hb_052941_010 Hb_002045_200--Hb_052941_010 Hb_002045_200--Hb_001425_050 Hb_005568_010 Hb_005568_010 Hb_002045_200--Hb_005568_010 Hb_003913_140 Hb_003913_140 Hb_002045_200--Hb_003913_140 Hb_001425_050--Hb_001902_120 Hb_001425_050--Hb_052941_010 Hb_001425_050--Hb_005568_010 Hb_001425_060 Hb_001425_060 Hb_001425_050--Hb_001425_060 Hb_003095_070 Hb_003095_070 Hb_001276_060--Hb_003095_070 Hb_011671_400 Hb_011671_400 Hb_001276_060--Hb_011671_400 Hb_003211_050 Hb_003211_050 Hb_001276_060--Hb_003211_050 Hb_005000_160 Hb_005000_160 Hb_001276_060--Hb_005000_160 Hb_000788_080 Hb_000788_080 Hb_001276_060--Hb_000788_080 Hb_009838_040 Hb_009838_040 Hb_001276_060--Hb_009838_040 Hb_000250_010 Hb_000250_010 Hb_008864_060--Hb_000250_010 Hb_001959_260 Hb_001959_260 Hb_008864_060--Hb_001959_260 Hb_008864_060--Hb_011671_400 Hb_008864_060--Hb_001276_060 Hb_002099_050 Hb_002099_050 Hb_008864_060--Hb_002099_050 Hb_008864_060--Hb_003211_050 Hb_001425_070--Hb_001425_060 Hb_091433_030 Hb_091433_030 Hb_001425_070--Hb_091433_030 Hb_004461_020 Hb_004461_020 Hb_001425_070--Hb_004461_020 Hb_001143_070 Hb_001143_070 Hb_001425_070--Hb_001143_070 Hb_000103_030 Hb_000103_030 Hb_001425_070--Hb_000103_030 Hb_034482_040 Hb_034482_040 Hb_001425_070--Hb_034482_040 Hb_001902_120--Hb_052941_010 Hb_001902_120--Hb_005568_010 Hb_179520_010 Hb_179520_010 Hb_001902_120--Hb_179520_010 Hb_010174_070 Hb_010174_070 Hb_001902_120--Hb_010174_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.569884 0.0172454 0.0522657 0.0261406 0.0496696 0.0303445
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.91124 8.25053 6.58573 0.173875 0

CAGE analysis