Hb_002328_080

Information

Type -
Description -
Location Contig2328: 53799-57045
Sequence    

Annotation

kegg
ID rcu:RCOM_1202730
description short-chain dehydrogenase, putative (EC:1.3.1.33)
nr
ID XP_002531343.1
description short-chain dehydrogenase, putative [Ricinus communis]
swissprot
ID A2RVM0
description Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana GN=TIC32 PE=2 SV=1
trembl
ID B9SZC4
description Short-chain dehydrogenase, putative OS=Ricinus communis GN=RCOM_1202730 PE=3 SV=1
Gene Ontology
ID GO:0016630
description short-chain dehydrogenase tic chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24479: 54828-57014 , PASA_asmbl_24480: 53728-57014 , PASA_asmbl_24481: 53728-57014
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002328_080 0.0 - - short-chain dehydrogenase, putative [Ricinus communis]
2 Hb_009707_020 0.0224792343 - - PREDICTED: 3-ketoacyl-CoA synthase 12 [Jatropha curcas]
3 Hb_000844_080 0.0284896501 transcription factor TF Family: G2-like hypothetical protein RCOM_1592640 [Ricinus communis]
4 Hb_001507_060 0.0320446666 - - translation initiation factor eif-2b gamma subunit, putative [Ricinus communis]
5 Hb_001295_070 0.0355766438 - - PREDICTED: putative UPF0481 protein At3g02645 [Jatropha curcas]
6 Hb_001775_020 0.0361357602 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
7 Hb_000010_160 0.0372719323 - - Uncharacterized protein TCM_014508 [Theobroma cacao]
8 Hb_007187_010 0.0392440944 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
9 Hb_011382_010 0.0421649303 - - hypothetical protein CICLE_v10028106mg [Citrus clementina]
10 Hb_003086_140 0.0440903562 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 6-like isoform X2 [Jatropha curcas]
11 Hb_000139_170 0.0464809632 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
12 Hb_000512_120 0.0479523169 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like [Jatropha curcas]
13 Hb_000731_150 0.048360178 - - PREDICTED: cytochrome P450 77A1 [Jatropha curcas]
14 Hb_001205_220 0.0487825054 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004993_020 0.0511313471 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
16 Hb_068580_010 0.0548452007 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 isoform X2 [Populus euphratica]
17 Hb_004032_400 0.0605101678 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
18 Hb_003734_070 0.0606584699 - - chlorophyll A/B binding protein, putative [Ricinus communis]
19 Hb_074312_010 0.0615565585 - - PREDICTED: cytochrome P450 82A3-like [Jatropha curcas]
20 Hb_005743_050 0.0619061531 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_002328_080 Hb_002328_080 Hb_009707_020 Hb_009707_020 Hb_002328_080--Hb_009707_020 Hb_000844_080 Hb_000844_080 Hb_002328_080--Hb_000844_080 Hb_001507_060 Hb_001507_060 Hb_002328_080--Hb_001507_060 Hb_001295_070 Hb_001295_070 Hb_002328_080--Hb_001295_070 Hb_001775_020 Hb_001775_020 Hb_002328_080--Hb_001775_020 Hb_000010_160 Hb_000010_160 Hb_002328_080--Hb_000010_160 Hb_011382_010 Hb_011382_010 Hb_009707_020--Hb_011382_010 Hb_007187_010 Hb_007187_010 Hb_009707_020--Hb_007187_010 Hb_009707_020--Hb_000844_080 Hb_009707_020--Hb_000010_160 Hb_009707_020--Hb_001775_020 Hb_000844_080--Hb_001775_020 Hb_000844_080--Hb_001295_070 Hb_000844_080--Hb_001507_060 Hb_000139_170 Hb_000139_170 Hb_000844_080--Hb_000139_170 Hb_001507_060--Hb_001295_070 Hb_001507_060--Hb_001775_020 Hb_001507_060--Hb_000139_170 Hb_001507_060--Hb_009707_020 Hb_001295_070--Hb_001775_020 Hb_001295_070--Hb_000139_170 Hb_005743_050 Hb_005743_050 Hb_001295_070--Hb_005743_050 Hb_001775_020--Hb_000139_170 Hb_001775_020--Hb_005743_050 Hb_000010_160--Hb_011382_010 Hb_001205_220 Hb_001205_220 Hb_000010_160--Hb_001205_220 Hb_000010_160--Hb_007187_010 Hb_000010_160--Hb_000844_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.107292 33.7419 19.6341 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00964954 49.0443

CAGE analysis