Hb_002329_030

Information

Type -
Description -
Location Contig2329: 64346-72480
Sequence    

Annotation

kegg
ID vvi:100253970
description pleiotropic drug resistance protein 2-like
nr
ID XP_012089672.1
description PREDICTED: pleiotropic drug resistance protein 2-like isoform X1 [Jatropha curcas]
swissprot
ID Q2PCF1
description Pleiotropic drug resistance protein 2 OS=Nicotiana plumbaginifolia GN=PDR2 PE=2 SV=1
trembl
ID A0A067LJZ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01505 PE=4 SV=1
Gene Ontology
ID GO:0016020
description pleiotropic drug resistance protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002329_030 0.0 - - PREDICTED: pleiotropic drug resistance protein 2-like isoform X1 [Jatropha curcas]
2 Hb_002272_070 0.0651671763 - - PREDICTED: keratin, type I cytoskeletal 9 [Jatropha curcas]
3 Hb_000072_160 0.0760134213 - - proline oxidase [Manihot esculenta]
4 Hb_000007_210 0.0954100105 - - hypothetical protein POPTR_0010s14360g [Populus trichocarpa]
5 Hb_014361_130 0.0968624925 - - PREDICTED: uncharacterized protein LOC105639824 [Jatropha curcas]
6 Hb_006615_190 0.097452926 - - UDP-glycosyltransferase 1 [Linum usitatissimum]
7 Hb_084127_010 0.1029272243 - - UDP-glucosyltransferase, putative [Ricinus communis]
8 Hb_007237_090 0.1029278611 - - conserved hypothetical protein [Ricinus communis]
9 Hb_145139_010 0.106755059 - - PREDICTED: sugar transporter ERD6-like 5 isoform X1 [Vitis vinifera]
10 Hb_000976_340 0.1135239321 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
11 Hb_002968_010 0.1143783598 - - PREDICTED: pectinesterase [Jatropha curcas]
12 Hb_000172_010 0.1171666532 - - PREDICTED: uncharacterized protein DDB_G0271670-like isoform X1 [Populus euphratica]
13 Hb_011470_010 0.1185702818 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
14 Hb_126466_010 0.1239859983 - - alcohol dehydrogenase, putative [Ricinus communis]
15 Hb_000579_220 0.1250213927 - - transcription factor, putative [Ricinus communis]
16 Hb_002475_010 0.1302968815 - - hypothetical protein JCGZ_22530 [Jatropha curcas]
17 Hb_000808_160 0.1338769681 - - PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]
18 Hb_005784_020 0.1346594404 - - Protein MKS1, putative [Ricinus communis]
19 Hb_002571_010 0.1347417295 - - cationic amino acid transporter, putative [Ricinus communis]
20 Hb_002276_100 0.1361266107 - - PREDICTED: UDP-glycosyltransferase 89A2-like [Jatropha curcas]

Gene co-expression network

sample Hb_002329_030 Hb_002329_030 Hb_002272_070 Hb_002272_070 Hb_002329_030--Hb_002272_070 Hb_000072_160 Hb_000072_160 Hb_002329_030--Hb_000072_160 Hb_000007_210 Hb_000007_210 Hb_002329_030--Hb_000007_210 Hb_014361_130 Hb_014361_130 Hb_002329_030--Hb_014361_130 Hb_006615_190 Hb_006615_190 Hb_002329_030--Hb_006615_190 Hb_084127_010 Hb_084127_010 Hb_002329_030--Hb_084127_010 Hb_002272_070--Hb_000072_160 Hb_011470_010 Hb_011470_010 Hb_002272_070--Hb_011470_010 Hb_126466_010 Hb_126466_010 Hb_002272_070--Hb_126466_010 Hb_002272_070--Hb_006615_190 Hb_145139_010 Hb_145139_010 Hb_002272_070--Hb_145139_010 Hb_000072_160--Hb_006615_190 Hb_000072_160--Hb_145139_010 Hb_002968_010 Hb_002968_010 Hb_000072_160--Hb_002968_010 Hb_000072_160--Hb_014361_130 Hb_000922_290 Hb_000922_290 Hb_000007_210--Hb_000922_290 Hb_000007_210--Hb_145139_010 Hb_005892_010 Hb_005892_010 Hb_000007_210--Hb_005892_010 Hb_000007_210--Hb_002968_010 Hb_000007_210--Hb_002272_070 Hb_014361_130--Hb_002272_070 Hb_014361_130--Hb_145139_010 Hb_009247_030 Hb_009247_030 Hb_014361_130--Hb_009247_030 Hb_066320_010 Hb_066320_010 Hb_014361_130--Hb_066320_010 Hb_007237_090 Hb_007237_090 Hb_006615_190--Hb_007237_090 Hb_006615_190--Hb_084127_010 Hb_000579_220 Hb_000579_220 Hb_006615_190--Hb_000579_220 Hb_000172_010 Hb_000172_010 Hb_006615_190--Hb_000172_010 Hb_084127_010--Hb_007237_090 Hb_084127_010--Hb_000579_220 Hb_000521_210 Hb_000521_210 Hb_084127_010--Hb_000521_210 Hb_074312_020 Hb_074312_020 Hb_084127_010--Hb_074312_020 Hb_020648_020 Hb_020648_020 Hb_084127_010--Hb_020648_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0041759 0.943064 0.0951459 0.456647 0.00808529 0.00742839
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00744182 0 0.335841 0.239605

CAGE analysis