Hb_002329_040

Information

Type -
Description -
Location Contig2329: 77334-82553
Sequence    

Annotation

kegg
ID rcu:RCOM_0760530
description hypothetical protein
nr
ID XP_012089730.1
description PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L967
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01506 PE=4 SV=1
Gene Ontology
ID GO:0031047
description suppressor of gene silencing

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24483: 77345-82530
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002329_040 0.0 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
2 Hb_002107_070 0.0479161722 - - hypothetical protein RCOM_1598630 [Ricinus communis]
3 Hb_027380_140 0.0492783714 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
4 Hb_000740_100 0.0504583842 - - calpain, putative [Ricinus communis]
5 Hb_012395_140 0.0506205769 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
6 Hb_001195_320 0.052613225 - - PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Jatropha curcas]
7 Hb_000183_020 0.0531546073 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
8 Hb_000922_370 0.0540163202 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
9 Hb_104061_020 0.056210842 - - PREDICTED: UV-stimulated scaffold protein A homolog [Jatropha curcas]
10 Hb_009175_020 0.0566455061 - - PREDICTED: uncharacterized protein LOC101303140 [Fragaria vesca subsp. vesca]
11 Hb_007635_030 0.058236711 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
12 Hb_003044_020 0.0584331666 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
13 Hb_000395_070 0.0590006438 - - PREDICTED: serine/threonine-protein kinase BLUS1 isoform X2 [Jatropha curcas]
14 Hb_003362_070 0.0600093656 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
15 Hb_002174_020 0.0605790631 - - ring finger protein, putative [Ricinus communis]
16 Hb_007426_130 0.0609650233 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
17 Hb_000390_320 0.0628419416 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-1b-like [Jatropha curcas]
18 Hb_000261_030 0.0629255976 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
19 Hb_004453_110 0.0635066786 - - Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]
20 Hb_000579_230 0.0640280678 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002329_040 Hb_002329_040 Hb_002107_070 Hb_002107_070 Hb_002329_040--Hb_002107_070 Hb_027380_140 Hb_027380_140 Hb_002329_040--Hb_027380_140 Hb_000740_100 Hb_000740_100 Hb_002329_040--Hb_000740_100 Hb_012395_140 Hb_012395_140 Hb_002329_040--Hb_012395_140 Hb_001195_320 Hb_001195_320 Hb_002329_040--Hb_001195_320 Hb_000183_020 Hb_000183_020 Hb_002329_040--Hb_000183_020 Hb_104061_020 Hb_104061_020 Hb_002107_070--Hb_104061_020 Hb_000369_130 Hb_000369_130 Hb_002107_070--Hb_000369_130 Hb_001821_090 Hb_001821_090 Hb_002107_070--Hb_001821_090 Hb_028487_010 Hb_028487_010 Hb_002107_070--Hb_028487_010 Hb_007635_030 Hb_007635_030 Hb_002107_070--Hb_007635_030 Hb_008024_030 Hb_008024_030 Hb_027380_140--Hb_008024_030 Hb_012053_080 Hb_012053_080 Hb_027380_140--Hb_012053_080 Hb_007062_020 Hb_007062_020 Hb_027380_140--Hb_007062_020 Hb_000470_070 Hb_000470_070 Hb_027380_140--Hb_000470_070 Hb_000574_440 Hb_000574_440 Hb_027380_140--Hb_000574_440 Hb_000261_030 Hb_000261_030 Hb_000740_100--Hb_000261_030 Hb_000395_070 Hb_000395_070 Hb_000740_100--Hb_000395_070 Hb_000740_100--Hb_008024_030 Hb_011173_030 Hb_011173_030 Hb_000740_100--Hb_011173_030 Hb_000740_100--Hb_104061_020 Hb_012395_140--Hb_000395_070 Hb_001550_060 Hb_001550_060 Hb_012395_140--Hb_001550_060 Hb_000579_230 Hb_000579_230 Hb_012395_140--Hb_000579_230 Hb_002815_030 Hb_002815_030 Hb_012395_140--Hb_002815_030 Hb_001814_030 Hb_001814_030 Hb_012395_140--Hb_001814_030 Hb_000166_130 Hb_000166_130 Hb_001195_320--Hb_000166_130 Hb_003371_110 Hb_003371_110 Hb_001195_320--Hb_003371_110 Hb_003029_110 Hb_003029_110 Hb_001195_320--Hb_003029_110 Hb_014361_070 Hb_014361_070 Hb_001195_320--Hb_014361_070 Hb_001195_320--Hb_000183_020 Hb_003044_020 Hb_003044_020 Hb_000183_020--Hb_003044_020 Hb_003362_070 Hb_003362_070 Hb_000183_020--Hb_003362_070 Hb_000183_020--Hb_000166_130 Hb_000922_370 Hb_000922_370 Hb_000183_020--Hb_000922_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.4203 12.6005 6.49365 8.70454 14.8509 14.9946
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.99287 5.15318 8.29825 12.303 9.37119

CAGE analysis