Hb_002333_040

Information

Type -
Description -
Location Contig2333: 68002-71222
Sequence    

Annotation

kegg
ID fve:101293623
description glycerate dehydrogenase-like
nr
ID KDO68081.1
description hypothetical protein CISIN_1g015895mg [Citrus sinensis]
swissprot
ID P13443
description Glycerate dehydrogenase OS=Cucumis sativus GN=HPR-A PE=2 SV=1
trembl
ID A0A067FXZ6
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g015895mg PE=3 SV=1
Gene Ontology
ID GO:0008465
description glycerate dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24501: 68040-71224
cDNA
(Sanger)
(ID:Location)		 033_F24.ab1: 69351-71224 , 037_K07.ab1: 69335-71204

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002333_040 0.0 - - hypothetical protein CISIN_1g015895mg [Citrus sinensis]
2 Hb_005348_120 0.082741894 - - PREDICTED: chlorophyll a-b binding protein, chloroplastic [Jatropha curcas]
3 Hb_000107_540 0.0838726868 - - PREDICTED: uncharacterized protein LOC105635335 [Jatropha curcas]
4 Hb_000009_470 0.0864085129 - - Oxygen-evolving enhancer protein 1, chloroplast precursor, putative [Ricinus communis]
5 Hb_001584_210 0.0881118408 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Jatropha curcas]
6 Hb_000017_210 0.0934631112 - - PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
7 Hb_000694_080 0.0973684581 - - phosphoribulose kinase, putative [Ricinus communis]
8 Hb_008948_130 0.1007428748 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002003_130 0.1008544125 - - hypothetical protein CISIN_1g027843mg [Citrus sinensis]
10 Hb_011344_030 0.1008733721 - - PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
11 Hb_004162_250 0.1011734515 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
12 Hb_005523_040 0.1012706127 - - PREDICTED: uncharacterized protein LOC100253680 [Vitis vinifera]
13 Hb_001517_010 0.1015207538 - - conserved hypothetical protein [Ricinus communis]
14 Hb_010080_070 0.1029791447 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH, chloroplastic [Jatropha curcas]
15 Hb_000482_030 0.1032369226 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like isoform X1 [Populus euphratica]
16 Hb_000482_180 0.1069369973 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
17 Hb_003171_040 0.1078956751 - - multidrug resistance pump, putative [Ricinus communis]
18 Hb_123689_010 0.1082780846 - - PREDICTED: uncharacterized protein At1g18480 [Jatropha curcas]
19 Hb_002534_090 0.109124956 - - geranylgeranyl reductase [Hevea brasiliensis]
20 Hb_001691_180 0.1102017864 - - phosphoglycerate mutase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002333_040 Hb_002333_040 Hb_005348_120 Hb_005348_120 Hb_002333_040--Hb_005348_120 Hb_000107_540 Hb_000107_540 Hb_002333_040--Hb_000107_540 Hb_000009_470 Hb_000009_470 Hb_002333_040--Hb_000009_470 Hb_001584_210 Hb_001584_210 Hb_002333_040--Hb_001584_210 Hb_000017_210 Hb_000017_210 Hb_002333_040--Hb_000017_210 Hb_000694_080 Hb_000694_080 Hb_002333_040--Hb_000694_080 Hb_004162_250 Hb_004162_250 Hb_005348_120--Hb_004162_250 Hb_000041_250 Hb_000041_250 Hb_005348_120--Hb_000041_250 Hb_005348_120--Hb_000107_540 Hb_005523_040 Hb_005523_040 Hb_005348_120--Hb_005523_040 Hb_006970_030 Hb_006970_030 Hb_005348_120--Hb_006970_030 Hb_001517_010 Hb_001517_010 Hb_000107_540--Hb_001517_010 Hb_001584_050 Hb_001584_050 Hb_000107_540--Hb_001584_050 Hb_000679_320 Hb_000679_320 Hb_000107_540--Hb_000679_320 Hb_000107_540--Hb_004162_250 Hb_011344_030 Hb_011344_030 Hb_000009_470--Hb_011344_030 Hb_001517_060 Hb_001517_060 Hb_000009_470--Hb_001517_060 Hb_004631_020 Hb_004631_020 Hb_000009_470--Hb_004631_020 Hb_002534_090 Hb_002534_090 Hb_000009_470--Hb_002534_090 Hb_007044_020 Hb_007044_020 Hb_000009_470--Hb_007044_020 Hb_004712_230 Hb_004712_230 Hb_000009_470--Hb_004712_230 Hb_001584_210--Hb_011344_030 Hb_002003_130 Hb_002003_130 Hb_001584_210--Hb_002003_130 Hb_007044_270 Hb_007044_270 Hb_001584_210--Hb_007044_270 Hb_001584_210--Hb_001517_010 Hb_001195_290 Hb_001195_290 Hb_001584_210--Hb_001195_290 Hb_000483_440 Hb_000483_440 Hb_000017_210--Hb_000483_440 Hb_000017_210--Hb_000694_080 Hb_007426_070 Hb_007426_070 Hb_000017_210--Hb_007426_070 Hb_000482_030 Hb_000482_030 Hb_000017_210--Hb_000482_030 Hb_004146_030 Hb_004146_030 Hb_000017_210--Hb_004146_030 Hb_005305_070 Hb_005305_070 Hb_000017_210--Hb_005305_070 Hb_000694_080--Hb_000482_030 Hb_087599_010 Hb_087599_010 Hb_000694_080--Hb_087599_010 Hb_000694_080--Hb_007426_070 Hb_000694_080--Hb_000483_440 Hb_000012_370 Hb_000012_370 Hb_000694_080--Hb_000012_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.70039 19.5684 189.577 99.9664 2.92182 5.80291
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.25348 0.835772 0.760551 20.7317 543.645

CAGE analysis