Hb_002333_050

Information

Type -
Description -
Location Contig2333: 86555-95259
Sequence    

Annotation

kegg
ID rcu:RCOM_1078940
description hypothetical protein
nr
ID XP_012085735.1
description PREDICTED: uncharacterized protein LOC105644854 isoform X1 [Jatropha curcas]
swissprot
ID Q6Y7W8
description PERQ amino acid-rich with GYF domain-containing protein 2 OS=Mus musculus GN=Gigyf2 PE=1 SV=2
trembl
ID A0A067K4W0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18007 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24502: 88548-90252 , PASA_asmbl_24503: 90599-95211
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002333_050 0.0 - - PREDICTED: uncharacterized protein LOC105644854 isoform X1 [Jatropha curcas]
2 Hb_188063_010 0.0368759649 - - hypothetical protein RCOM_1469330 [Ricinus communis]
3 Hb_009486_170 0.0455591754 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
4 Hb_002909_120 0.0489331338 - - PREDICTED: transcription elongation factor SPT6 [Jatropha curcas]
5 Hb_000025_710 0.0633750283 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
6 Hb_001699_280 0.0656860876 - - PREDICTED: transformation/transcription domain-associated protein [Jatropha curcas]
7 Hb_000665_230 0.0667574757 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
8 Hb_001133_030 0.0684688367 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
9 Hb_003581_170 0.0691210949 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
10 Hb_007576_210 0.0714726212 - - PREDICTED: protein furry homolog [Jatropha curcas]
11 Hb_003805_040 0.0727043239 - - Sacsin [Glycine soja]
12 Hb_000261_150 0.0730079534 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000176_100 0.0743856897 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
14 Hb_007632_010 0.0754118081 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
15 Hb_011947_050 0.0757006593 - - E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
16 Hb_012244_020 0.0767667897 - - calpain, putative [Ricinus communis]
17 Hb_000086_690 0.0767993952 - - PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]
18 Hb_011689_030 0.0768569254 - - 80 kD MCM3-associated protein, putative [Ricinus communis]
19 Hb_001188_020 0.0771489808 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X1 [Jatropha curcas]
20 Hb_005656_040 0.0792728314 desease resistance Gene Name: T2SE ATP-dependent RNA helicase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002333_050 Hb_002333_050 Hb_188063_010 Hb_188063_010 Hb_002333_050--Hb_188063_010 Hb_009486_170 Hb_009486_170 Hb_002333_050--Hb_009486_170 Hb_002909_120 Hb_002909_120 Hb_002333_050--Hb_002909_120 Hb_000025_710 Hb_000025_710 Hb_002333_050--Hb_000025_710 Hb_001699_280 Hb_001699_280 Hb_002333_050--Hb_001699_280 Hb_000665_230 Hb_000665_230 Hb_002333_050--Hb_000665_230 Hb_188063_010--Hb_000025_710 Hb_188063_010--Hb_001699_280 Hb_188063_010--Hb_009486_170 Hb_003581_170 Hb_003581_170 Hb_188063_010--Hb_003581_170 Hb_000261_150 Hb_000261_150 Hb_188063_010--Hb_000261_150 Hb_001133_030 Hb_001133_030 Hb_009486_170--Hb_001133_030 Hb_003805_040 Hb_003805_040 Hb_009486_170--Hb_003805_040 Hb_009486_170--Hb_000665_230 Hb_007576_210 Hb_007576_210 Hb_009486_170--Hb_007576_210 Hb_000086_690 Hb_000086_690 Hb_009486_170--Hb_000086_690 Hb_000046_190 Hb_000046_190 Hb_002909_120--Hb_000046_190 Hb_003119_080 Hb_003119_080 Hb_002909_120--Hb_003119_080 Hb_002909_120--Hb_009486_170 Hb_002909_120--Hb_188063_010 Hb_002909_120--Hb_001133_030 Hb_005402_040 Hb_005402_040 Hb_000025_710--Hb_005402_040 Hb_001191_120 Hb_001191_120 Hb_000025_710--Hb_001191_120 Hb_000176_100 Hb_000176_100 Hb_000025_710--Hb_000176_100 Hb_005542_140 Hb_005542_140 Hb_000025_710--Hb_005542_140 Hb_000105_040 Hb_000105_040 Hb_001699_280--Hb_000105_040 Hb_001699_280--Hb_003581_170 Hb_001699_280--Hb_000261_150 Hb_001662_180 Hb_001662_180 Hb_001699_280--Hb_001662_180 Hb_001951_170 Hb_001951_170 Hb_001699_280--Hb_001951_170 Hb_011689_030 Hb_011689_030 Hb_000665_230--Hb_011689_030 Hb_000665_230--Hb_003805_040 Hb_000665_230--Hb_000176_100 Hb_000665_230--Hb_001133_030 Hb_002007_110 Hb_002007_110 Hb_000665_230--Hb_002007_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.22386 16.2812 4.41702 8.64661 10.9866 9.71277
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.03545 4.52817 5.50527 11.5605 14.2184

CAGE analysis