Hb_002333_080

Information

Type transcription factor
Description TF Family: TCP
Location Contig2333: 110016-110939
Sequence    

Annotation

kegg
ID rcu:RCOM_1078980
description transcription factor, putative
nr
ID XP_011036116.1
description PREDICTED: transcription factor TCP20-like [Populus euphratica]
swissprot
ID Q9LSD5
description Transcription factor TCP20 OS=Arabidopsis thaliana GN=TCP20 PE=1 SV=1
trembl
ID B9RMA7
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1078980 PE=4 SV=1
Gene Ontology
ID GO:0043565
description transcription factor tcp20-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24508: 109512-110835
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002333_080 0.0 transcription factor TF Family: TCP PREDICTED: transcription factor TCP20-like [Populus euphratica]
2 Hb_000500_090 0.0867453021 - - nucleoside diphosphate kinase 2 [Hevea brasiliensis]
3 Hb_004970_110 0.1045099173 - - PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Jatropha curcas]
4 Hb_003120_030 0.1054396581 - - PREDICTED: vacuolar protein sorting-associated protein 35B isoform X2 [Jatropha curcas]
5 Hb_001329_220 0.1067108855 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007317_180 0.1106831951 - - hypothetical protein CICLE_v10028933mg [Citrus clementina]
7 Hb_011828_020 0.1106983015 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X2 [Jatropha curcas]
8 Hb_000638_080 0.1111661871 - - PREDICTED: uncharacterized protein LOC105632765 [Jatropha curcas]
9 Hb_007254_040 0.1117785657 - - PREDICTED: protein MITOFERRINLIKE 1, chloroplastic [Jatropha curcas]
10 Hb_004048_070 0.112524934 - - PREDICTED: anaphase-promoting complex subunit 6 [Jatropha curcas]
11 Hb_032717_080 0.1133224109 - - gamma-soluble nsf attachment protein, putative [Ricinus communis]
12 Hb_012022_030 0.1143638938 transcription factor TF Family: Alfin-like phd/F-box containing protein, putative [Ricinus communis]
13 Hb_002685_020 0.1149679029 - - -
14 Hb_001277_320 0.1152360652 - - Stem-specific protein TSJT1, putative [Ricinus communis]
15 Hb_005539_030 0.1152527417 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
16 Hb_000877_060 0.1157472204 - - hypothetical protein POPTR_0002s22050g [Populus trichocarpa]
17 Hb_005329_020 0.1159500147 - - PREDICTED: U-box domain-containing protein 8 [Jatropha curcas]
18 Hb_005056_060 0.1159848395 - - PREDICTED: prostamide/prostaglandin F synthase isoform X1 [Jatropha curcas]
19 Hb_003159_080 0.1169751737 - - PREDICTED: uncharacterized protein LOC105639276 [Jatropha curcas]
20 Hb_000329_650 0.1193369013 - - hypothetical protein POPTR_0014s056001g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_002333_080 Hb_002333_080 Hb_000500_090 Hb_000500_090 Hb_002333_080--Hb_000500_090 Hb_004970_110 Hb_004970_110 Hb_002333_080--Hb_004970_110 Hb_003120_030 Hb_003120_030 Hb_002333_080--Hb_003120_030 Hb_001329_220 Hb_001329_220 Hb_002333_080--Hb_001329_220 Hb_007317_180 Hb_007317_180 Hb_002333_080--Hb_007317_180 Hb_011828_020 Hb_011828_020 Hb_002333_080--Hb_011828_020 Hb_000500_090--Hb_001329_220 Hb_000500_090--Hb_007317_180 Hb_007254_040 Hb_007254_040 Hb_000500_090--Hb_007254_040 Hb_000162_170 Hb_000162_170 Hb_000500_090--Hb_000162_170 Hb_000500_090--Hb_004970_110 Hb_004970_110--Hb_007317_180 Hb_005539_030 Hb_005539_030 Hb_004970_110--Hb_005539_030 Hb_004970_110--Hb_007254_040 Hb_004048_070 Hb_004048_070 Hb_004970_110--Hb_004048_070 Hb_027472_150 Hb_027472_150 Hb_004970_110--Hb_027472_150 Hb_000169_010 Hb_000169_010 Hb_004970_110--Hb_000169_010 Hb_003120_030--Hb_001329_220 Hb_003120_030--Hb_000500_090 Hb_003159_080 Hb_003159_080 Hb_003120_030--Hb_003159_080 Hb_003976_010 Hb_003976_010 Hb_003120_030--Hb_003976_010 Hb_003120_030--Hb_004048_070 Hb_001329_220--Hb_000169_010 Hb_001329_220--Hb_007254_040 Hb_000032_570 Hb_000032_570 Hb_001329_220--Hb_000032_570 Hb_001329_220--Hb_004048_070 Hb_001329_220--Hb_004970_110 Hb_007317_180--Hb_007254_040 Hb_011310_190 Hb_011310_190 Hb_007317_180--Hb_011310_190 Hb_007317_180--Hb_004048_070 Hb_002027_070 Hb_002027_070 Hb_007317_180--Hb_002027_070 Hb_008554_020 Hb_008554_020 Hb_007317_180--Hb_008554_020 Hb_000395_080 Hb_000395_080 Hb_011828_020--Hb_000395_080 Hb_000877_060 Hb_000877_060 Hb_011828_020--Hb_000877_060 Hb_001477_130 Hb_001477_130 Hb_011828_020--Hb_001477_130 Hb_003020_230 Hb_003020_230 Hb_011828_020--Hb_003020_230 Hb_000613_140 Hb_000613_140 Hb_011828_020--Hb_000613_140 Hb_000923_050 Hb_000923_050 Hb_011828_020--Hb_000923_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.8452 15.3355 7.43176 19.1643 28.115 38.3602
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
70.5837 43.4479 25.9465 50.9986 9.48858

CAGE analysis