Hb_002336_050

Information

Type -
Description -
Location Contig2336: 46729-55108
Sequence    

Annotation

kegg
ID rcu:RCOM_0446110
description ankyrin repeat-containing protein, putative
nr
ID XP_002533395.1
description ankyrin repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q6AWW5
description Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1
trembl
ID B9T576
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0446110 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002336_050 0.0 - - ankyrin repeat-containing protein, putative [Ricinus communis]
2 Hb_004563_010 0.0603037116 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_005532_030 0.0702372471 - - DNA binding protein, putative [Ricinus communis]
4 Hb_008536_020 0.0851313158 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
5 Hb_006831_090 0.0871053453 - - PREDICTED: uncharacterized protein LOC105642125 isoform X1 [Jatropha curcas]
6 Hb_002600_170 0.0909429072 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004032_280 0.0924561445 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
8 Hb_012098_120 0.0958698921 - - PREDICTED: putative elongation of fatty acids protein DDB_G0272012 [Jatropha curcas]
9 Hb_000803_080 0.0970163002 desease resistance Gene Name: ABC_tran ATP-binding cassette transporter, putative [Ricinus communis]
10 Hb_028491_010 0.0988884292 - - hypothetical protein JCGZ_12857 [Jatropha curcas]
11 Hb_166718_010 0.0998250946 - - heat-shock protein, putative [Ricinus communis]
12 Hb_000329_780 0.1014795243 - - hypothetical protein POPTR_0403s00200g [Populus trichocarpa]
13 Hb_001141_100 0.1016477246 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
14 Hb_004607_110 0.1024212578 - - PREDICTED: serine/threonine-protein kinase Nek6 [Jatropha curcas]
15 Hb_003162_060 0.1032722719 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
16 Hb_172426_070 0.1034541111 - - PREDICTED: BAG family molecular chaperone regulator 3-like isoform X1 [Jatropha curcas]
17 Hb_008195_090 0.1049872528 - - conserved hypothetical protein [Ricinus communis]
18 Hb_086300_010 0.1062018048 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
19 Hb_001735_040 0.1074278012 - - PREDICTED: F-box protein SKIP2-like isoform X2 [Populus euphratica]
20 Hb_020956_030 0.1077076583 - - PREDICTED: swi5-dependent recombination DNA repair protein 1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_002336_050 Hb_002336_050 Hb_004563_010 Hb_004563_010 Hb_002336_050--Hb_004563_010 Hb_005532_030 Hb_005532_030 Hb_002336_050--Hb_005532_030 Hb_008536_020 Hb_008536_020 Hb_002336_050--Hb_008536_020 Hb_006831_090 Hb_006831_090 Hb_002336_050--Hb_006831_090 Hb_002600_170 Hb_002600_170 Hb_002336_050--Hb_002600_170 Hb_004032_280 Hb_004032_280 Hb_002336_050--Hb_004032_280 Hb_008195_090 Hb_008195_090 Hb_004563_010--Hb_008195_090 Hb_012098_120 Hb_012098_120 Hb_004563_010--Hb_012098_120 Hb_003151_020 Hb_003151_020 Hb_004563_010--Hb_003151_020 Hb_029991_010 Hb_029991_010 Hb_004563_010--Hb_029991_010 Hb_004607_110 Hb_004607_110 Hb_004563_010--Hb_004607_110 Hb_002374_180 Hb_002374_180 Hb_005532_030--Hb_002374_180 Hb_005532_030--Hb_002600_170 Hb_005532_030--Hb_006831_090 Hb_086300_010 Hb_086300_010 Hb_005532_030--Hb_086300_010 Hb_000329_780 Hb_000329_780 Hb_005532_030--Hb_000329_780 Hb_008536_020--Hb_002600_170 Hb_008536_020--Hb_006831_090 Hb_008536_020--Hb_000329_780 Hb_000520_040 Hb_000520_040 Hb_008536_020--Hb_000520_040 Hb_008536_020--Hb_004032_280 Hb_008536_020--Hb_002374_180 Hb_006831_090--Hb_000329_780 Hb_006831_090--Hb_002600_170 Hb_006831_090--Hb_004032_280 Hb_006831_090--Hb_002374_180 Hb_172426_070 Hb_172426_070 Hb_006831_090--Hb_172426_070 Hb_002600_170--Hb_002374_180 Hb_002600_170--Hb_000329_780 Hb_002600_170--Hb_004032_280 Hb_000599_150 Hb_000599_150 Hb_004032_280--Hb_000599_150 Hb_004032_280--Hb_000329_780 Hb_166718_010 Hb_166718_010 Hb_004032_280--Hb_166718_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0355989 0.0451836 0.698713 0.968358 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0338645 1.4739

CAGE analysis