Hb_002338_030

Information

Type -
Description -
Location Contig2338: 80103-80915
Sequence    

Annotation

kegg
ID rcu:RCOM_0969300
description 60S acidic ribosomal protein P1, putative
nr
ID XP_010541757.1
description PREDICTED: 60S acidic ribosomal protein P1-like [Tarenaya hassleriana]
swissprot
ID P52855
description 60S acidic ribosomal protein P1 OS=Zea mays GN=RPP1A PE=1 SV=1
trembl
ID B9SEJ7
description 60S acidic ribosomal protein P1, putative OS=Ricinus communis GN=RCOM_0969300 PE=3 SV=1
Gene Ontology
ID GO:0030529
description 60s acidic ribosomal protein p1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24549: 80126-80872
cDNA
(Sanger)
(ID:Location)		 011_F18.ab1: 80126-80872

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002338_030 0.0 - - PREDICTED: 60S acidic ribosomal protein P1-like [Tarenaya hassleriana]
2 Hb_002835_340 0.1919476173 - - PREDICTED: peroxisomal primary amine oxidase [Jatropha curcas]
3 Hb_000599_310 0.1992812091 - - PREDICTED: pleckstrin homology domain-containing family A member 8-like [Jatropha curcas]
4 Hb_003673_040 0.2393717269 - - dynamin family protein [Populus trichocarpa]
5 Hb_006836_030 0.2398257613 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
6 Hb_003687_220 0.2454191109 transcription factor TF Family: MYB hypothetical protein POPTR_0008s16660g [Populus trichocarpa]
7 Hb_000317_420 0.2479809849 - - PREDICTED: extradiol ring-cleavage dioxygenase [Jatropha curcas]
8 Hb_002768_090 0.2495037809 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
9 Hb_000567_180 0.252381586 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.5 [Jatropha curcas]
10 Hb_000175_470 0.254906418 - - lactoylglutathione lyase, putative [Ricinus communis]
11 Hb_001414_020 0.2556076539 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Jatropha curcas]
12 Hb_002539_040 0.262296851 - - SPFH domain-containing protein 2 precursor, putative [Ricinus communis]
13 Hb_007441_240 0.2642586812 - - ethphon-induced protein [Hevea brasiliensis]
14 Hb_011242_050 0.2646281674 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa [Jatropha curcas]
15 Hb_000754_070 0.2659890739 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006538_190 0.266201805 - - PREDICTED: homocysteine S-methyltransferase 1 isoform X1 [Jatropha curcas]
17 Hb_003592_030 0.2707788083 - - PREDICTED: dCTP pyrophosphatase 1-like [Jatropha curcas]
18 Hb_002627_020 0.2729796331 - - PREDICTED: TBC1 domain family member 2B [Jatropha curcas]
19 Hb_021409_140 0.273541476 - - PREDICTED: trehalase isoform X1 [Jatropha curcas]
20 Hb_000656_190 0.274758583 - - PREDICTED: probable nucleoside diphosphate kinase 5 [Jatropha curcas]

Gene co-expression network

sample Hb_002338_030 Hb_002338_030 Hb_002835_340 Hb_002835_340 Hb_002338_030--Hb_002835_340 Hb_000599_310 Hb_000599_310 Hb_002338_030--Hb_000599_310 Hb_003673_040 Hb_003673_040 Hb_002338_030--Hb_003673_040 Hb_006836_030 Hb_006836_030 Hb_002338_030--Hb_006836_030 Hb_003687_220 Hb_003687_220 Hb_002338_030--Hb_003687_220 Hb_000317_420 Hb_000317_420 Hb_002338_030--Hb_000317_420 Hb_001975_040 Hb_001975_040 Hb_002835_340--Hb_001975_040 Hb_002835_340--Hb_000317_420 Hb_003592_030 Hb_003592_030 Hb_002835_340--Hb_003592_030 Hb_002539_040 Hb_002539_040 Hb_002835_340--Hb_002539_040 Hb_012807_130 Hb_012807_130 Hb_002835_340--Hb_012807_130 Hb_002660_120 Hb_002660_120 Hb_002835_340--Hb_002660_120 Hb_000599_310--Hb_002835_340 Hb_000886_030 Hb_000886_030 Hb_000599_310--Hb_000886_030 Hb_007849_010 Hb_007849_010 Hb_000599_310--Hb_007849_010 Hb_000049_200 Hb_000049_200 Hb_000599_310--Hb_000049_200 Hb_002960_090 Hb_002960_090 Hb_000599_310--Hb_002960_090 Hb_021079_010 Hb_021079_010 Hb_003673_040--Hb_021079_010 Hb_000330_030 Hb_000330_030 Hb_003673_040--Hb_000330_030 Hb_027298_030 Hb_027298_030 Hb_003673_040--Hb_027298_030 Hb_097218_020 Hb_097218_020 Hb_003673_040--Hb_097218_020 Hb_003181_060 Hb_003181_060 Hb_003673_040--Hb_003181_060 Hb_002631_300 Hb_002631_300 Hb_003673_040--Hb_002631_300 Hb_006836_030--Hb_000317_420 Hb_006836_030--Hb_027298_030 Hb_000012_110 Hb_000012_110 Hb_006836_030--Hb_000012_110 Hb_006836_030--Hb_001975_040 Hb_001975_030 Hb_001975_030 Hb_006836_030--Hb_001975_030 Hb_004007_110 Hb_004007_110 Hb_006836_030--Hb_004007_110 Hb_170426_010 Hb_170426_010 Hb_003687_220--Hb_170426_010 Hb_005144_190 Hb_005144_190 Hb_003687_220--Hb_005144_190 Hb_008759_020 Hb_008759_020 Hb_003687_220--Hb_008759_020 Hb_001449_100 Hb_001449_100 Hb_003687_220--Hb_001449_100 Hb_004679_060 Hb_004679_060 Hb_003687_220--Hb_004679_060 Hb_007441_240 Hb_007441_240 Hb_000317_420--Hb_007441_240 Hb_000317_420--Hb_004007_110 Hb_000723_170 Hb_000723_170 Hb_000317_420--Hb_000723_170 Hb_000317_420--Hb_001975_040 Hb_158104_020 Hb_158104_020 Hb_000317_420--Hb_158104_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.517209 2.86704 16.401 23.4578 0.730015 0.417455
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.99853 31.6038 0.157396 27.3624 5.73999

CAGE analysis