Hb_002339_030

Information

Type -
Description -
Location Contig2339: 22677-30058
Sequence    

Annotation

kegg
ID rcu:RCOM_1171380
description o-methyltransferase, putative (EC:2.1.1.146)
nr
ID XP_002517833.1
description o-methyltransferase, putative [Ricinus communis]
swissprot
ID B6VJS4
description Trans-resveratrol di-O-methyltransferase OS=Vitis vinifera GN=ROMT PE=1 SV=2
trembl
ID B9RVR4
description O-methyltransferase, putative OS=Ricinus communis GN=RCOM_1171380 PE=4 SV=1
Gene Ontology
ID GO:0046983
description orcinol o-methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002339_030 0.0 - - o-methyltransferase, putative [Ricinus communis]
2 Hb_000165_200 0.1525313556 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
3 Hb_001472_110 0.1527392792 desease resistance Gene Name: TIR_2 nucleoside-triphosphatase, putative [Ricinus communis]
4 Hb_002301_110 0.1606808713 - - PREDICTED: protein E6-like [Populus euphratica]
5 Hb_009767_050 0.1645649066 - - PREDICTED: uncharacterized protein LOC105631978 isoform X1 [Jatropha curcas]
6 Hb_164926_040 0.1663888011 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
7 Hb_002072_040 0.1763630166 - - PREDICTED: uncharacterized protein LOC105630881 [Jatropha curcas]
8 Hb_004545_070 0.1840472477 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
9 Hb_003688_210 0.1907136689 - - replication factor A 1, rfa1, putative [Ricinus communis]
10 Hb_000186_290 0.1934765892 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 8 isoform X1 [Jatropha curcas]
11 Hb_006501_100 0.2036245871 - - malic enzyme, putative [Ricinus communis]
12 Hb_001047_170 0.2047693301 - - PREDICTED: uncharacterized protein LOC105649981 [Jatropha curcas]
13 Hb_002025_380 0.2051045707 - - Uncharacterized protein TCM_011176 [Theobroma cacao]
14 Hb_010931_020 0.2061348076 - - Kunitz-type protease inhibitor KPI-F4 [Populus trichocarpa x Populus deltoides]
15 Hb_002097_180 0.2095970023 - - PREDICTED: probable pectate lyase 12 isoform X1 [Jatropha curcas]
16 Hb_008066_060 0.2105849944 - - PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease SBT1.6 [Jatropha curcas]
17 Hb_002818_170 0.2148765786 - - hypothetical protein POPTR_0014s10650g [Populus trichocarpa]
18 Hb_006277_030 0.2159666381 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007138_030 0.2192873672 - - PREDICTED: putative disease resistance protein At4g11170 [Jatropha curcas]
20 Hb_009545_030 0.2195519483 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002339_030 Hb_002339_030 Hb_000165_200 Hb_000165_200 Hb_002339_030--Hb_000165_200 Hb_001472_110 Hb_001472_110 Hb_002339_030--Hb_001472_110 Hb_002301_110 Hb_002301_110 Hb_002339_030--Hb_002301_110 Hb_009767_050 Hb_009767_050 Hb_002339_030--Hb_009767_050 Hb_164926_040 Hb_164926_040 Hb_002339_030--Hb_164926_040 Hb_002072_040 Hb_002072_040 Hb_002339_030--Hb_002072_040 Hb_000165_200--Hb_164926_040 Hb_000165_200--Hb_001472_110 Hb_004545_070 Hb_004545_070 Hb_000165_200--Hb_004545_070 Hb_000165_200--Hb_002301_110 Hb_009545_030 Hb_009545_030 Hb_000165_200--Hb_009545_030 Hb_001472_110--Hb_164926_040 Hb_001472_110--Hb_002301_110 Hb_003562_030 Hb_003562_030 Hb_001472_110--Hb_003562_030 Hb_001472_110--Hb_002072_040 Hb_001047_170 Hb_001047_170 Hb_002301_110--Hb_001047_170 Hb_002301_110--Hb_164926_040 Hb_002301_110--Hb_002072_040 Hb_002025_380 Hb_002025_380 Hb_009767_050--Hb_002025_380 Hb_002818_170 Hb_002818_170 Hb_009767_050--Hb_002818_170 Hb_009767_050--Hb_002072_040 Hb_002097_180 Hb_002097_180 Hb_009767_050--Hb_002097_180 Hb_003189_010 Hb_003189_010 Hb_009767_050--Hb_003189_010 Hb_006277_030 Hb_006277_030 Hb_009767_050--Hb_006277_030 Hb_003972_060 Hb_003972_060 Hb_164926_040--Hb_003972_060 Hb_000186_290 Hb_000186_290 Hb_164926_040--Hb_000186_290 Hb_008695_150 Hb_008695_150 Hb_164926_040--Hb_008695_150 Hb_002072_040--Hb_002025_380 Hb_005168_020 Hb_005168_020 Hb_002072_040--Hb_005168_020 Hb_002072_040--Hb_006277_030 Hb_002072_040--Hb_003189_010 Hb_005731_070 Hb_005731_070 Hb_002072_040--Hb_005731_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0304281 0.0100629 0.39692 1.16382 0.0196527 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0461085 0.0181396 0.137522 1.24151 0.30651

CAGE analysis