Hb_002341_030

Information

Type -
Description -
Location Contig2341: 55672-59802
Sequence    

Annotation

kegg
ID rcu:RCOM_0489380
description aprataxin, putative
nr
ID XP_012089813.1
description PREDICTED: transcription factor bHLH140 [Jatropha curcas]
swissprot
ID Q9M041
description Transcription factor bHLH140 OS=Arabidopsis thaliana GN=BHLH140 PE=3 SV=1
trembl
ID A0A067JG93
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00449 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor bhlh140

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24568: 55749-56857 , PASA_asmbl_24570: 56885-58201
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002341_030 0.0 - - PREDICTED: transcription factor bHLH140 [Jatropha curcas]
2 Hb_012016_020 0.0734008804 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105636265 [Jatropha curcas]
3 Hb_002725_070 0.0833924292 - - hypothetical protein PRUPE_ppa005949mg [Prunus persica]
4 Hb_005635_010 0.0856576437 - - PREDICTED: cleft lip and palate transmembrane protein 1 homolog [Jatropha curcas]
5 Hb_002928_060 0.0868806467 - - PREDICTED: pre-rRNA-processing protein TSR1 homolog [Jatropha curcas]
6 Hb_001504_160 0.0870038643 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
7 Hb_110364_010 0.0885147566 - - gamma-tubulin complex component, putative [Ricinus communis]
8 Hb_001431_070 0.089957203 - - PREDICTED: large proline-rich protein bag6-like isoform X2 [Jatropha curcas]
9 Hb_000001_180 0.0904847523 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]
10 Hb_000413_130 0.092007165 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
11 Hb_000906_060 0.0924655919 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g08820 [Populus euphratica]
12 Hb_001019_170 0.0924714614 - - PREDICTED: uncharacterized protein LOC105639322 [Jatropha curcas]
13 Hb_000230_330 0.0948605289 - - PREDICTED: calcium-binding protein 39-like [Populus euphratica]
14 Hb_001871_040 0.0951032333 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 1-like isoform X2 [Jatropha curcas]
15 Hb_005295_040 0.0956383066 - - PREDICTED: polyadenylate-binding protein RBP47-like [Jatropha curcas]
16 Hb_002601_120 0.0958385509 - - PREDICTED: uncharacterized protein LOC105634921 [Jatropha curcas]
17 Hb_000076_080 0.0962078745 - - PREDICTED: protein MOS2 [Jatropha curcas]
18 Hb_000003_790 0.0964609127 - - PREDICTED: nuclear poly(A) polymerase 4-like [Jatropha curcas]
19 Hb_000173_400 0.0967498155 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18950 [Jatropha curcas]
20 Hb_001582_030 0.0982930136 - - PREDICTED: uncharacterized protein LOC105639462 [Jatropha curcas]

Gene co-expression network

sample Hb_002341_030 Hb_002341_030 Hb_012016_020 Hb_012016_020 Hb_002341_030--Hb_012016_020 Hb_002725_070 Hb_002725_070 Hb_002341_030--Hb_002725_070 Hb_005635_010 Hb_005635_010 Hb_002341_030--Hb_005635_010 Hb_002928_060 Hb_002928_060 Hb_002341_030--Hb_002928_060 Hb_001504_160 Hb_001504_160 Hb_002341_030--Hb_001504_160 Hb_110364_010 Hb_110364_010 Hb_002341_030--Hb_110364_010 Hb_001871_040 Hb_001871_040 Hb_012016_020--Hb_001871_040 Hb_000453_080 Hb_000453_080 Hb_012016_020--Hb_000453_080 Hb_005399_010 Hb_005399_010 Hb_012016_020--Hb_005399_010 Hb_000906_060 Hb_000906_060 Hb_012016_020--Hb_000906_060 Hb_008528_010 Hb_008528_010 Hb_012016_020--Hb_008528_010 Hb_005295_040 Hb_005295_040 Hb_002725_070--Hb_005295_040 Hb_042083_070 Hb_042083_070 Hb_002725_070--Hb_042083_070 Hb_000814_090 Hb_000814_090 Hb_002725_070--Hb_000814_090 Hb_002820_040 Hb_002820_040 Hb_002725_070--Hb_002820_040 Hb_000078_100 Hb_000078_100 Hb_002725_070--Hb_000078_100 Hb_117950_020 Hb_117950_020 Hb_002725_070--Hb_117950_020 Hb_005635_010--Hb_000814_090 Hb_005635_010--Hb_005295_040 Hb_001040_160 Hb_001040_160 Hb_005635_010--Hb_001040_160 Hb_005635_010--Hb_002725_070 Hb_003299_090 Hb_003299_090 Hb_005635_010--Hb_003299_090 Hb_005635_010--Hb_000078_100 Hb_004055_040 Hb_004055_040 Hb_002928_060--Hb_004055_040 Hb_005730_030 Hb_005730_030 Hb_002928_060--Hb_005730_030 Hb_002874_070 Hb_002874_070 Hb_002928_060--Hb_002874_070 Hb_000230_330 Hb_000230_330 Hb_002928_060--Hb_000230_330 Hb_002928_060--Hb_001871_040 Hb_003362_040 Hb_003362_040 Hb_002928_060--Hb_003362_040 Hb_000076_080 Hb_000076_080 Hb_001504_160--Hb_000076_080 Hb_012654_010 Hb_012654_010 Hb_001504_160--Hb_012654_010 Hb_001504_160--Hb_000230_330 Hb_004724_360 Hb_004724_360 Hb_001504_160--Hb_004724_360 Hb_000107_100 Hb_000107_100 Hb_001504_160--Hb_000107_100 Hb_003384_030 Hb_003384_030 Hb_001504_160--Hb_003384_030 Hb_001307_140 Hb_001307_140 Hb_110364_010--Hb_001307_140 Hb_063047_010 Hb_063047_010 Hb_110364_010--Hb_063047_010 Hb_110364_010--Hb_001040_160 Hb_110364_010--Hb_005635_010 Hb_110364_010--Hb_001871_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.3905 17.866 6.1537 5.67541 36.4603 49.4627
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.6559 10.0259 20.6599 9.92796 3.33955

CAGE analysis