Hb_002343_060

Information

Type -
Description -
Location Contig2343: 69390-79624
Sequence    

Annotation

kegg
ID cic:CICLE_v10022790mg
description hypothetical protein
nr
ID XP_012087083.1
description PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
swissprot
ID Q84W04
description Protein cornichon homolog 4 OS=Arabidopsis thaliana GN=At1g12390 PE=1 SV=1
trembl
ID A0A067FKN5
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032611mg PE=4 SV=1
Gene Ontology
ID GO:0005622
description protein cornichon homolog 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24580: 69377-80430
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002343_060 0.0 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
2 Hb_004108_070 0.0735307817 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Jatropha curcas]
3 Hb_000317_390 0.0747453962 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
4 Hb_008071_020 0.0779318612 - - PREDICTED: serine/threonine-protein kinase AFC1 [Jatropha curcas]
5 Hb_001341_090 0.0780191471 - - PREDICTED: adenylate kinase isoenzyme 6 homolog [Jatropha curcas]
6 Hb_004889_020 0.0804865375 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
7 Hb_026314_020 0.0807874717 - - hypothetical protein POPTR_0019s10050g [Populus trichocarpa]
8 Hb_005054_060 0.0808168264 - - PREDICTED: syntaxin-81 [Jatropha curcas]
9 Hb_007441_330 0.0808329892 - - PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
10 Hb_010361_010 0.0812631687 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
11 Hb_000005_090 0.0823050931 - - hypothetical protein CICLE_v10029644mg [Citrus clementina]
12 Hb_000261_160 0.0831843201 - - PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X2 [Jatropha curcas]
13 Hb_154948_040 0.0900410766 - - hypothetical protein B456_013G043800 [Gossypium raimondii]
14 Hb_017895_040 0.0901915311 - - hypothetical protein POPTR_0006s08120g [Populus trichocarpa]
15 Hb_000566_120 0.0910727587 - - PREDICTED: uncharacterized protein LOC105123035 isoform X1 [Populus euphratica]
16 Hb_026889_030 0.0916990617 - - protein with unknown function [Ricinus communis]
17 Hb_000826_100 0.0935988793 - - PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Jatropha curcas]
18 Hb_002375_070 0.0940193008 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000815_320 0.0942229463 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
20 Hb_024439_010 0.0947883298 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]

Gene co-expression network

sample Hb_002343_060 Hb_002343_060 Hb_004108_070 Hb_004108_070 Hb_002343_060--Hb_004108_070 Hb_000317_390 Hb_000317_390 Hb_002343_060--Hb_000317_390 Hb_008071_020 Hb_008071_020 Hb_002343_060--Hb_008071_020 Hb_001341_090 Hb_001341_090 Hb_002343_060--Hb_001341_090 Hb_004889_020 Hb_004889_020 Hb_002343_060--Hb_004889_020 Hb_026314_020 Hb_026314_020 Hb_002343_060--Hb_026314_020 Hb_005731_050 Hb_005731_050 Hb_004108_070--Hb_005731_050 Hb_006693_020 Hb_006693_020 Hb_004108_070--Hb_006693_020 Hb_004108_070--Hb_000317_390 Hb_000815_320 Hb_000815_320 Hb_004108_070--Hb_000815_320 Hb_012286_030 Hb_012286_030 Hb_004108_070--Hb_012286_030 Hb_002375_070 Hb_002375_070 Hb_004108_070--Hb_002375_070 Hb_152784_010 Hb_152784_010 Hb_000317_390--Hb_152784_010 Hb_000331_200 Hb_000331_200 Hb_000317_390--Hb_000331_200 Hb_001318_250 Hb_001318_250 Hb_000317_390--Hb_001318_250 Hb_000045_310 Hb_000045_310 Hb_000317_390--Hb_000045_310 Hb_000317_390--Hb_006693_020 Hb_001931_010 Hb_001931_010 Hb_008071_020--Hb_001931_010 Hb_001279_080 Hb_001279_080 Hb_008071_020--Hb_001279_080 Hb_028396_010 Hb_028396_010 Hb_008071_020--Hb_028396_010 Hb_026053_020 Hb_026053_020 Hb_008071_020--Hb_026053_020 Hb_006326_040 Hb_006326_040 Hb_008071_020--Hb_006326_040 Hb_008071_020--Hb_000045_310 Hb_005045_060 Hb_005045_060 Hb_001341_090--Hb_005045_060 Hb_134949_020 Hb_134949_020 Hb_001341_090--Hb_134949_020 Hb_000996_140 Hb_000996_140 Hb_001341_090--Hb_000996_140 Hb_002864_050 Hb_002864_050 Hb_001341_090--Hb_002864_050 Hb_000527_060 Hb_000527_060 Hb_001341_090--Hb_000527_060 Hb_026889_030 Hb_026889_030 Hb_004889_020--Hb_026889_030 Hb_004157_020 Hb_004157_020 Hb_004889_020--Hb_004157_020 Hb_004889_020--Hb_006326_040 Hb_157022_010 Hb_157022_010 Hb_004889_020--Hb_157022_010 Hb_000676_390 Hb_000676_390 Hb_004889_020--Hb_000676_390 Hb_004889_020--Hb_008071_020 Hb_005278_020 Hb_005278_020 Hb_026314_020--Hb_005278_020 Hb_000826_100 Hb_000826_100 Hb_026314_020--Hb_000826_100 Hb_000005_090 Hb_000005_090 Hb_026314_020--Hb_000005_090 Hb_019762_020 Hb_019762_020 Hb_026314_020--Hb_019762_020 Hb_026314_020--Hb_001318_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.5386 7.75479 23.1418 32.3887 19.1321 23.631
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.8729 53.8601 31.0975 11.2982 20.6194

CAGE analysis