Hb_002344_080

Information

Type -
Description -
Location Contig2344: 69728-79345
Sequence    

Annotation

kegg
ID rcu:RCOM_0711440
description Adipocyte plasma membrane-associated protein, putative (EC:4.3.3.2)
nr
ID XP_011039971.1
description PREDICTED: protein YLS2-like [Populus euphratica]
swissprot
ID Q9SD07
description Protein STRICTOSIDINE SYNTHASE-LIKE 4 OS=Arabidopsis thaliana GN=SSL4 PE=1 SV=1
trembl
ID A0A067KFZ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07499 PE=4 SV=1
Gene Ontology
ID GO:0016844
description protein yls2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24586: 69735-72200 , PASA_asmbl_24588: 73553-96678
cDNA
(Sanger)
(ID:Location)		 012_M02.ab1: 70314-72053 , 028_H07.ab1: 70608-72200

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002344_080 0.0 - - PREDICTED: protein YLS2-like [Populus euphratica]
2 Hb_001689_030 0.0793072091 - - PREDICTED: J domain-containing protein required for chloroplast accumulation response 1 [Jatropha curcas]
3 Hb_000816_160 0.1008391168 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
4 Hb_003177_090 0.1028272352 - - PREDICTED: filament-like plant protein 4 [Jatropha curcas]
5 Hb_000181_230 0.1138599056 - - copper ion binding protein, putative [Ricinus communis]
6 Hb_143629_200 0.1146587031 - - hypothetical protein POPTR_0013s00300g [Populus trichocarpa]
7 Hb_000103_410 0.1212119613 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]
8 Hb_002010_070 0.1237481694 - - hypothetical protein EUGRSUZ_I027342, partial [Eucalyptus grandis]
9 Hb_000418_150 0.1255567253 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_002849_180 0.1256484668 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
11 Hb_000326_080 0.1257316117 - - lrr receptor protein kinase, putative [Ricinus communis]
12 Hb_000438_020 0.1282496787 - - leucine-rich repeat-containing protein 2, lrrc2, putative [Ricinus communis]
13 Hb_006040_170 0.1291788046 - - NADH-ubiquinone oxidoreductase chain [Medicago truncatula]
14 Hb_000215_290 0.1324824466 transcription factor TF Family: NAC PREDICTED: protein BEARSKIN2 isoform X2 [Jatropha curcas]
15 Hb_003007_030 0.1332884575 - - -
16 Hb_143871_010 0.1368450483 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
17 Hb_001706_020 0.141530145 - - PREDICTED: organic cation/carnitine transporter 7 [Jatropha curcas]
18 Hb_006483_090 0.1428259834 - - PREDICTED: uncharacterized protein LOC105639979 [Jatropha curcas]
19 Hb_000753_150 0.1431784492 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.4 [Jatropha curcas]
20 Hb_001951_230 0.1432003983 - - PREDICTED: phytochrome E isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002344_080 Hb_002344_080 Hb_001689_030 Hb_001689_030 Hb_002344_080--Hb_001689_030 Hb_000816_160 Hb_000816_160 Hb_002344_080--Hb_000816_160 Hb_003177_090 Hb_003177_090 Hb_002344_080--Hb_003177_090 Hb_000181_230 Hb_000181_230 Hb_002344_080--Hb_000181_230 Hb_143629_200 Hb_143629_200 Hb_002344_080--Hb_143629_200 Hb_000103_410 Hb_000103_410 Hb_002344_080--Hb_000103_410 Hb_001689_030--Hb_003177_090 Hb_001689_030--Hb_000103_410 Hb_002888_040 Hb_002888_040 Hb_001689_030--Hb_002888_040 Hb_001689_030--Hb_000816_160 Hb_003007_030 Hb_003007_030 Hb_001689_030--Hb_003007_030 Hb_000363_050 Hb_000363_050 Hb_000816_160--Hb_000363_050 Hb_003077_140 Hb_003077_140 Hb_000816_160--Hb_003077_140 Hb_000816_160--Hb_003007_030 Hb_004605_020 Hb_004605_020 Hb_000816_160--Hb_004605_020 Hb_006040_170 Hb_006040_170 Hb_003177_090--Hb_006040_170 Hb_000757_020 Hb_000757_020 Hb_003177_090--Hb_000757_020 Hb_000418_150 Hb_000418_150 Hb_003177_090--Hb_000418_150 Hb_003177_090--Hb_143629_200 Hb_005724_040 Hb_005724_040 Hb_000181_230--Hb_005724_040 Hb_007483_120 Hb_007483_120 Hb_000181_230--Hb_007483_120 Hb_002740_100 Hb_002740_100 Hb_000181_230--Hb_002740_100 Hb_002099_060 Hb_002099_060 Hb_000181_230--Hb_002099_060 Hb_002685_160 Hb_002685_160 Hb_000181_230--Hb_002685_160 Hb_001706_020 Hb_001706_020 Hb_143629_200--Hb_001706_020 Hb_000215_290 Hb_000215_290 Hb_143629_200--Hb_000215_290 Hb_002010_070 Hb_002010_070 Hb_143629_200--Hb_002010_070 Hb_144449_010 Hb_144449_010 Hb_143629_200--Hb_144449_010 Hb_000868_130 Hb_000868_130 Hb_143629_200--Hb_000868_130 Hb_000959_010 Hb_000959_010 Hb_143629_200--Hb_000959_010 Hb_001195_250 Hb_001195_250 Hb_000103_410--Hb_001195_250 Hb_000103_410--Hb_003177_090 Hb_025045_010 Hb_025045_010 Hb_000103_410--Hb_025045_010 Hb_002809_120 Hb_002809_120 Hb_000103_410--Hb_002809_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.13737 45.3148 28.5536 40.1184 4.31953 2.69484
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0897602 0.0706182 0.0885752 24.9057 54.4995

CAGE analysis