Hb_002344_090

Information

Type -
Description -
Location Contig2344: 85397-85852
Sequence    

Annotation

kegg
ID rcu:RCOM_0711450
description hypothetical protein
nr
ID XP_012077063.1
description PREDICTED: uncharacterized protein LOC105637976 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KCQ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07498 PE=4 SV=1
Gene Ontology
ID GO:0016021
description PREDICTED: uncharacterized protein LOC105637976

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24589: 85315-85995
cDNA
(Sanger)
(ID:Location)		 024_A08.ab1: 85748-85995

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002344_090 0.0 - - PREDICTED: uncharacterized protein LOC105637976 [Jatropha curcas]
2 Hb_000008_230 0.1546496121 - - hypothetical protein POPTR_0004s22120g [Populus trichocarpa]
3 Hb_012340_020 0.1626373463 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial [Jatropha curcas]
4 Hb_106321_030 0.1674421851 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
5 Hb_000122_250 0.1711581205 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 2C, putative [Ricinus communis]
6 Hb_010068_030 0.1718918271 - - aconitase, putative [Ricinus communis]
7 Hb_013394_060 0.1724358761 - - PREDICTED: IST1-like protein isoform X1 [Jatropha curcas]
8 Hb_000720_070 0.1756338205 transcription factor TF Family: HSF hypothetical protein JCGZ_20639 [Jatropha curcas]
9 Hb_000755_080 0.1800528466 - - hypothetical protein RCOM_1016710 [Ricinus communis]
10 Hb_001534_070 0.1853658753 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Eucalyptus grandis]
11 Hb_002918_310 0.1896017243 - - PREDICTED: dnaJ protein homolog 1-like [Jatropha curcas]
12 Hb_035947_010 0.1904594783 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
13 Hb_003656_110 0.1935491054 - - phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
14 Hb_002311_250 0.1936355607 - - hypothetical protein JCGZ_18936 [Jatropha curcas]
15 Hb_008749_050 0.1938966906 - - PREDICTED: uncharacterized J domain-containing protein C4H3.01 [Jatropha curcas]
16 Hb_097433_010 0.1946499653 - - PREDICTED: TPR repeat-containing thioredoxin TDX [Jatropha curcas]
17 Hb_003097_190 0.2004839366 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
18 Hb_020805_010 0.2014912251 - - protein with unknown function [Ricinus communis]
19 Hb_003327_030 0.2027314147 - - Hsc70-interacting protein, putative [Ricinus communis]
20 Hb_017711_020 0.2030762462 - - PREDICTED: cysteine-rich repeat secretory protein 56 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002344_090 Hb_002344_090 Hb_000008_230 Hb_000008_230 Hb_002344_090--Hb_000008_230 Hb_012340_020 Hb_012340_020 Hb_002344_090--Hb_012340_020 Hb_106321_030 Hb_106321_030 Hb_002344_090--Hb_106321_030 Hb_000122_250 Hb_000122_250 Hb_002344_090--Hb_000122_250 Hb_010068_030 Hb_010068_030 Hb_002344_090--Hb_010068_030 Hb_013394_060 Hb_013394_060 Hb_002344_090--Hb_013394_060 Hb_008749_050 Hb_008749_050 Hb_000008_230--Hb_008749_050 Hb_001769_020 Hb_001769_020 Hb_000008_230--Hb_001769_020 Hb_000008_230--Hb_012340_020 Hb_035947_010 Hb_035947_010 Hb_000008_230--Hb_035947_010 Hb_002374_440 Hb_002374_440 Hb_000008_230--Hb_002374_440 Hb_001534_070 Hb_001534_070 Hb_012340_020--Hb_001534_070 Hb_012340_020--Hb_002374_440 Hb_000206_130 Hb_000206_130 Hb_012340_020--Hb_000206_130 Hb_012340_020--Hb_010068_030 Hb_002918_310 Hb_002918_310 Hb_012340_020--Hb_002918_310 Hb_003688_200 Hb_003688_200 Hb_012340_020--Hb_003688_200 Hb_002890_030 Hb_002890_030 Hb_106321_030--Hb_002890_030 Hb_003097_190 Hb_003097_190 Hb_106321_030--Hb_003097_190 Hb_106321_030--Hb_010068_030 Hb_000152_560 Hb_000152_560 Hb_106321_030--Hb_000152_560 Hb_029866_130 Hb_029866_130 Hb_106321_030--Hb_029866_130 Hb_029388_040 Hb_029388_040 Hb_106321_030--Hb_029388_040 Hb_000122_250--Hb_013394_060 Hb_002999_060 Hb_002999_060 Hb_000122_250--Hb_002999_060 Hb_000720_070 Hb_000720_070 Hb_000122_250--Hb_000720_070 Hb_003517_060 Hb_003517_060 Hb_000122_250--Hb_003517_060 Hb_000538_010 Hb_000538_010 Hb_000122_250--Hb_000538_010 Hb_010068_030--Hb_003097_190 Hb_010068_030--Hb_000152_560 Hb_000422_140 Hb_000422_140 Hb_010068_030--Hb_000422_140 Hb_010068_030--Hb_002890_030 Hb_002499_070 Hb_002499_070 Hb_010068_030--Hb_002499_070 Hb_000258_130 Hb_000258_130 Hb_010068_030--Hb_000258_130 Hb_013394_060--Hb_002999_060 Hb_000483_380 Hb_000483_380 Hb_013394_060--Hb_000483_380 Hb_002965_030 Hb_002965_030 Hb_013394_060--Hb_002965_030 Hb_013394_060--Hb_000720_070 Hb_030827_060 Hb_030827_060 Hb_013394_060--Hb_030827_060 Hb_013394_060--Hb_000538_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.32672 20.574 7.47248 6.99733 57.037 18.9104
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.29357 9.97869 14.1064 2.12063 4.72937

CAGE analysis