Hb_002344_100

Information

Type -
Description -
Location Contig2344: 90776-92176
Sequence    

Annotation

kegg
ID rcu:RCOM_0711460
description cation:cation antiporter, putative
nr
ID XP_012077062.1
description PREDICTED: cation/calcium exchanger 4-like [Jatropha curcas]
swissprot
ID Q9SYG9
description Cation/calcium exchanger 4 OS=Arabidopsis thaliana GN=CCX4 PE=2 SV=1
trembl
ID B9RR92
description Cation:cation antiporter, putative OS=Ricinus communis GN=RCOM_0711460 PE=4 SV=1
Gene Ontology
ID GO:0016020
description cation calcium exchanger 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24590: 90753-91020 , PASA_asmbl_24592: 91761-92015 , PASA_asmbl_24593: 91267-91575
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002344_100 0.0 - - PREDICTED: cation/calcium exchanger 4-like [Jatropha curcas]
2 Hb_002325_070 0.1068649053 - - ATP binding protein, putative [Ricinus communis]
3 Hb_000679_230 0.1197606992 - - PREDICTED: serine/threonine-protein kinase PRP4 homolog [Jatropha curcas]
4 Hb_000704_040 0.1251976936 - - aquaporin sip2.1, putative [Ricinus communis]
5 Hb_006469_070 0.1306681527 - - PREDICTED: F-box/kelch-repeat protein At1g22040 [Jatropha curcas]
6 Hb_000413_020 0.1311397421 - - PREDICTED: U-box domain-containing protein 8 [Jatropha curcas]
7 Hb_000984_310 0.1364670221 - - Hydrolase, hydrolyzing O-glycosyl compounds, putative [Theobroma cacao]
8 Hb_003911_020 0.1389292959 - - PREDICTED: uncharacterized protein LOC105121332 [Populus euphratica]
9 Hb_001486_190 0.1394003615 - - hypothetical protein JCGZ_02702 [Jatropha curcas]
10 Hb_007153_050 0.1463997981 - - PREDICTED: transmembrane 9 superfamily member 8 [Jatropha curcas]
11 Hb_001946_180 0.150882529 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004137_020 0.1520511928 - - PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 isoform X2 [Jatropha curcas]
13 Hb_010883_190 0.1539070269 - - conserved hypothetical protein [Ricinus communis]
14 Hb_026740_020 0.1543796082 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH1 [Manihot esculenta]
15 Hb_000656_310 0.1556889292 - - PREDICTED: cation/calcium exchanger 4-like [Jatropha curcas]
16 Hb_009296_080 0.156468329 - - PREDICTED: probable apyrase 7 isoform X1 [Jatropha curcas]
17 Hb_000172_100 0.1578210446 - - PREDICTED: acyl-coenzyme A oxidase 2, peroxisomal [Jatropha curcas]
18 Hb_000265_140 0.1579270381 - - PREDICTED: transmembrane 9 superfamily member 12 [Jatropha curcas]
19 Hb_001842_010 0.158259154 - - serine/threonine protein kinase, putative [Ricinus communis]
20 Hb_000946_110 0.1604138527 - - GTP cyclohydrolase I, putative [Ricinus communis]

Gene co-expression network

sample Hb_002344_100 Hb_002344_100 Hb_002325_070 Hb_002325_070 Hb_002344_100--Hb_002325_070 Hb_000679_230 Hb_000679_230 Hb_002344_100--Hb_000679_230 Hb_000704_040 Hb_000704_040 Hb_002344_100--Hb_000704_040 Hb_006469_070 Hb_006469_070 Hb_002344_100--Hb_006469_070 Hb_000413_020 Hb_000413_020 Hb_002344_100--Hb_000413_020 Hb_000984_310 Hb_000984_310 Hb_002344_100--Hb_000984_310 Hb_010883_190 Hb_010883_190 Hb_002325_070--Hb_010883_190 Hb_003911_020 Hb_003911_020 Hb_002325_070--Hb_003911_020 Hb_002325_070--Hb_000704_040 Hb_002639_020 Hb_002639_020 Hb_002325_070--Hb_002639_020 Hb_002325_070--Hb_000679_230 Hb_007153_050 Hb_007153_050 Hb_000679_230--Hb_007153_050 Hb_002289_060 Hb_002289_060 Hb_000679_230--Hb_002289_060 Hb_001946_180 Hb_001946_180 Hb_000679_230--Hb_001946_180 Hb_001842_010 Hb_001842_010 Hb_000679_230--Hb_001842_010 Hb_003052_180 Hb_003052_180 Hb_000679_230--Hb_003052_180 Hb_000679_230--Hb_003911_020 Hb_000928_190 Hb_000928_190 Hb_000704_040--Hb_000928_190 Hb_033152_070 Hb_033152_070 Hb_000704_040--Hb_033152_070 Hb_000243_350 Hb_000243_350 Hb_000704_040--Hb_000243_350 Hb_009898_040 Hb_009898_040 Hb_000704_040--Hb_009898_040 Hb_002046_060 Hb_002046_060 Hb_006469_070--Hb_002046_060 Hb_019280_020 Hb_019280_020 Hb_006469_070--Hb_019280_020 Hb_000265_140 Hb_000265_140 Hb_006469_070--Hb_000265_140 Hb_004109_050 Hb_004109_050 Hb_006469_070--Hb_004109_050 Hb_021576_070 Hb_021576_070 Hb_006469_070--Hb_021576_070 Hb_001754_020 Hb_001754_020 Hb_006469_070--Hb_001754_020 Hb_026740_020 Hb_026740_020 Hb_000413_020--Hb_026740_020 Hb_000193_300 Hb_000193_300 Hb_000413_020--Hb_000193_300 Hb_005192_010 Hb_005192_010 Hb_000413_020--Hb_005192_010 Hb_003975_010 Hb_003975_010 Hb_000413_020--Hb_003975_010 Hb_000413_020--Hb_001946_180 Hb_009252_030 Hb_009252_030 Hb_000413_020--Hb_009252_030 Hb_001486_190 Hb_001486_190 Hb_000984_310--Hb_001486_190 Hb_001051_070 Hb_001051_070 Hb_000984_310--Hb_001051_070 Hb_012651_010 Hb_012651_010 Hb_000984_310--Hb_012651_010 Hb_000836_280 Hb_000836_280 Hb_000984_310--Hb_000836_280 Hb_000679_100 Hb_000679_100 Hb_000984_310--Hb_000679_100 Hb_000140_350 Hb_000140_350 Hb_000984_310--Hb_000140_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.8447 4.58905 1.26905 9.17568 0.662035 2.51006
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.2644 1.46234 4.3839 2.63457 4.93574

CAGE analysis