Hb_002344_130

Information

Type -
Description -
Location Contig2344: 96039-96329
Sequence    

Annotation

kegg
ID rcu:RCOM_0711470
description copper transporter, putative
nr
ID XP_012077536.1
description PREDICTED: copper transporter 5 [Jatropha curcas]
swissprot
ID Q93VM8
description Copper transporter 5 OS=Arabidopsis thaliana GN=COPT5 PE=1 SV=1
trembl
ID B9RR93
description Copper transporter, putative OS=Ricinus communis GN=RCOM_0711470 PE=4 SV=1
Gene Ontology
ID GO:0016021
description copper transporter 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24587: 95785-96678
cDNA
(Sanger)
(ID:Location)		 041_M10.ab1: 95819-96520

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002344_130 0.0 - - PREDICTED: copper transporter 5 [Jatropha curcas]
2 Hb_000003_540 0.1296983017 - - PREDICTED: homeobox-leucine zipper protein ATHB-15 [Jatropha curcas]
3 Hb_000111_030 0.1376232971 - - PREDICTED: uncharacterized protein LOC104094030 [Nicotiana tomentosiformis]
4 Hb_000023_290 0.1421084044 - - steroid binding protein, putative [Ricinus communis]
5 Hb_000245_080 0.1447059341 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-15 [Jatropha curcas]
6 Hb_145629_010 0.1454565905 - - -
7 Hb_001747_030 0.1516808942 - - hypothetical protein F383_08210 [Gossypium arboreum]
8 Hb_060715_010 0.1586776233 - - PREDICTED: notchless protein homolog [Gossypium raimondii]
9 Hb_003938_160 0.162061079 - - PREDICTED: transcription factor bHLH155 [Jatropha curcas]
10 Hb_000481_050 0.1622815505 - - PREDICTED: uncharacterized protein LOC105636546 [Jatropha curcas]
11 Hb_130613_010 0.1644697822 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
12 Hb_000359_140 0.1681604149 - - PREDICTED: transmembrane protein 56-like [Jatropha curcas]
13 Hb_002133_020 0.1696648855 - - conserved hypothetical protein [Ricinus communis]
14 Hb_066913_010 0.1724948594 - - hypothetical protein POPTR_0006s03150g [Populus trichocarpa]
15 Hb_000363_330 0.1725326651 - - -
16 Hb_181385_010 0.1747355877 - - PREDICTED: uncharacterized protein LOC105650319 [Jatropha curcas]
17 Hb_074715_010 0.1801885746 - - PREDICTED: disease resistance protein RPS6-like isoform X2 [Jatropha curcas]
18 Hb_000384_070 0.1805450214 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002631_280 0.1806503607 - - PREDICTED: ubiquitin isoform X2 [Eucalyptus grandis]
20 Hb_000066_090 0.1813027543 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]

Gene co-expression network

sample Hb_002344_130 Hb_002344_130 Hb_000003_540 Hb_000003_540 Hb_002344_130--Hb_000003_540 Hb_000111_030 Hb_000111_030 Hb_002344_130--Hb_000111_030 Hb_000023_290 Hb_000023_290 Hb_002344_130--Hb_000023_290 Hb_000245_080 Hb_000245_080 Hb_002344_130--Hb_000245_080 Hb_145629_010 Hb_145629_010 Hb_002344_130--Hb_145629_010 Hb_001747_030 Hb_001747_030 Hb_002344_130--Hb_001747_030 Hb_005784_040 Hb_005784_040 Hb_000003_540--Hb_005784_040 Hb_002631_280 Hb_002631_280 Hb_000003_540--Hb_002631_280 Hb_000670_050 Hb_000670_050 Hb_000003_540--Hb_000670_050 Hb_000003_540--Hb_000245_080 Hb_181385_010 Hb_181385_010 Hb_000003_540--Hb_181385_010 Hb_002388_010 Hb_002388_010 Hb_000111_030--Hb_002388_010 Hb_130613_010 Hb_130613_010 Hb_000111_030--Hb_130613_010 Hb_000111_030--Hb_001747_030 Hb_182713_020 Hb_182713_020 Hb_000111_030--Hb_182713_020 Hb_002192_090 Hb_002192_090 Hb_000111_030--Hb_002192_090 Hb_002133_020 Hb_002133_020 Hb_000023_290--Hb_002133_020 Hb_000016_060 Hb_000016_060 Hb_000023_290--Hb_000016_060 Hb_004176_070 Hb_004176_070 Hb_000023_290--Hb_004176_070 Hb_000733_080 Hb_000733_080 Hb_000023_290--Hb_000733_080 Hb_000359_090 Hb_000359_090 Hb_000023_290--Hb_000359_090 Hb_000023_290--Hb_001747_030 Hb_024879_010 Hb_024879_010 Hb_000245_080--Hb_024879_010 Hb_005539_310 Hb_005539_310 Hb_000245_080--Hb_005539_310 Hb_006065_050 Hb_006065_050 Hb_000245_080--Hb_006065_050 Hb_000359_140 Hb_000359_140 Hb_000245_080--Hb_000359_140 Hb_001217_040 Hb_001217_040 Hb_000245_080--Hb_001217_040 Hb_000481_050 Hb_000481_050 Hb_145629_010--Hb_000481_050 Hb_003938_160 Hb_003938_160 Hb_145629_010--Hb_003938_160 Hb_066913_010 Hb_066913_010 Hb_145629_010--Hb_066913_010 Hb_001135_140 Hb_001135_140 Hb_145629_010--Hb_001135_140 Hb_000363_330 Hb_000363_330 Hb_145629_010--Hb_000363_330 Hb_001747_030--Hb_002133_020 Hb_000125_010 Hb_000125_010 Hb_001747_030--Hb_000125_010 Hb_000635_070 Hb_000635_070 Hb_001747_030--Hb_000635_070 Hb_072922_010 Hb_072922_010 Hb_001747_030--Hb_072922_010 Hb_002960_130 Hb_002960_130 Hb_001747_030--Hb_002960_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
82.7874 99.7468 25.1391 334.157 52.2864 110.466
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
103.206 162.08 45.0774 53.0154 28.0568

CAGE analysis