Hb_002345_080

Information

Type -
Description -
Location Contig2345: 164727-170583
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002345_080 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_040948_020 0.1308463463 - - -
3 Hb_004800_050 0.1945971884 - - PREDICTED: uncharacterized protein LOC105643859 [Jatropha curcas]
4 Hb_004607_100 0.2222151264 - - PREDICTED: uncharacterized protein LOC103445866 [Malus domestica]
5 Hb_001638_100 0.2293574453 - - PREDICTED: probable protein S-acyltransferase 12 [Vitis vinifera]
6 Hb_003228_070 0.2352380156 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001501_040 0.2612433368 - - PREDICTED: uncharacterized protein LOC102663792 [Glycine max]
8 Hb_000510_220 0.2826407552 - - -
9 Hb_136850_040 0.2900428045 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
10 Hb_001369_310 0.2989200375 - - tonoplast intrinsic protein, putative [Ricinus communis]
11 Hb_008173_100 0.3140300327 - - Kiwellin, putative [Ricinus communis]
12 Hb_000173_200 0.3240360524 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003405_040 0.329149757 - - PREDICTED: uncharacterized protein LOC105121978 [Populus euphratica]
14 Hb_143643_010 0.3358968424 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC103967596 [Pyrus x bretschneideri]
15 Hb_004970_040 0.3362397148 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
16 Hb_001031_060 0.3362551234 - - PREDICTED: uncharacterized protein LOC103940329 [Pyrus x bretschneideri]
17 Hb_000230_070 0.3367611082 - - Galactose oxidase precursor, putative [Ricinus communis]
18 Hb_003939_020 0.3384093778 - - PREDICTED: zinc finger protein KNUCKLES [Jatropha curcas]
19 Hb_002374_330 0.3415571956 - - -
20 Hb_002426_010 0.3585847045 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]

Gene co-expression network

sample Hb_002345_080 Hb_002345_080 Hb_040948_020 Hb_040948_020 Hb_002345_080--Hb_040948_020 Hb_004800_050 Hb_004800_050 Hb_002345_080--Hb_004800_050 Hb_004607_100 Hb_004607_100 Hb_002345_080--Hb_004607_100 Hb_001638_100 Hb_001638_100 Hb_002345_080--Hb_001638_100 Hb_003228_070 Hb_003228_070 Hb_002345_080--Hb_003228_070 Hb_001501_040 Hb_001501_040 Hb_002345_080--Hb_001501_040 Hb_040948_020--Hb_001638_100 Hb_040948_020--Hb_004800_050 Hb_040948_020--Hb_001501_040 Hb_040948_020--Hb_004607_100 Hb_001369_310 Hb_001369_310 Hb_040948_020--Hb_001369_310 Hb_004800_050--Hb_001638_100 Hb_004800_050--Hb_004607_100 Hb_004800_050--Hb_001501_040 Hb_000123_100 Hb_000123_100 Hb_004800_050--Hb_000123_100 Hb_000230_070 Hb_000230_070 Hb_004607_100--Hb_000230_070 Hb_004607_100--Hb_003228_070 Hb_143643_010 Hb_143643_010 Hb_004607_100--Hb_143643_010 Hb_000111_220 Hb_000111_220 Hb_004607_100--Hb_000111_220 Hb_001638_100--Hb_001501_040 Hb_005348_130 Hb_005348_130 Hb_001638_100--Hb_005348_130 Hb_001638_100--Hb_004607_100 Hb_000173_200 Hb_000173_200 Hb_003228_070--Hb_000173_200 Hb_136850_040 Hb_136850_040 Hb_003228_070--Hb_136850_040 Hb_003939_020 Hb_003939_020 Hb_003228_070--Hb_003939_020 Hb_000836_590 Hb_000836_590 Hb_003228_070--Hb_000836_590 Hb_001031_060 Hb_001031_060 Hb_001501_040--Hb_001031_060 Hb_000510_220 Hb_000510_220 Hb_001501_040--Hb_000510_220 Hb_002426_010 Hb_002426_010 Hb_001501_040--Hb_002426_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00431252 0.00408205 0 0.00524818 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis