Hb_002346_020

Information

Type -
Description -
Location Contig2346: 24473-25949
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24596: 24337-25838
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002346_020 0.0 - - -
2 Hb_047503_010 0.0573824286 - - PREDICTED: putative protein N-methyltransferase YNL024C [Jatropha curcas]
3 Hb_001512_060 0.0685790608 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Jatropha curcas]
4 Hb_001552_020 0.0690387733 - - PREDICTED: uncharacterized protein LOC105639653 [Jatropha curcas]
5 Hb_002928_130 0.0729407386 - - PREDICTED: small nuclear ribonucleoprotein Sm D3 [Jatropha curcas]
6 Hb_000096_070 0.0761598189 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
7 Hb_002027_250 0.0767647527 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_001635_180 0.0777117527 - - PREDICTED: F-box/FBD/LRR-repeat protein At5g53840-like [Jatropha curcas]
9 Hb_001305_010 0.0777654522 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Jatropha curcas]
10 Hb_000327_120 0.078075083 - - FGFR1 oncogene partner, putative [Ricinus communis]
11 Hb_002888_030 0.0786000855 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
12 Hb_002530_030 0.0798712156 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 [Jatropha curcas]
13 Hb_002043_190 0.0802872447 - - rwd domain-containing protein, putative [Ricinus communis]
14 Hb_005993_040 0.0806912619 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Jatropha curcas]
15 Hb_004491_010 0.0810911831 - - 60S ribosomal protein L51, putative [Ricinus communis]
16 Hb_025645_010 0.0826387176 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
17 Hb_003417_020 0.0834612828 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
18 Hb_001564_130 0.0839002833 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
19 Hb_000034_100 0.0850069917 - - dnajc14 protein, putative [Ricinus communis]
20 Hb_011609_100 0.0852569073 - - PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_002346_020 Hb_002346_020 Hb_047503_010 Hb_047503_010 Hb_002346_020--Hb_047503_010 Hb_001512_060 Hb_001512_060 Hb_002346_020--Hb_001512_060 Hb_001552_020 Hb_001552_020 Hb_002346_020--Hb_001552_020 Hb_002928_130 Hb_002928_130 Hb_002346_020--Hb_002928_130 Hb_000096_070 Hb_000096_070 Hb_002346_020--Hb_000096_070 Hb_002027_250 Hb_002027_250 Hb_002346_020--Hb_002027_250 Hb_047503_010--Hb_001512_060 Hb_011609_100 Hb_011609_100 Hb_047503_010--Hb_011609_100 Hb_002888_030 Hb_002888_030 Hb_047503_010--Hb_002888_030 Hb_002232_440 Hb_002232_440 Hb_047503_010--Hb_002232_440 Hb_003125_200 Hb_003125_200 Hb_047503_010--Hb_003125_200 Hb_010921_010 Hb_010921_010 Hb_001512_060--Hb_010921_010 Hb_000362_200 Hb_000362_200 Hb_001512_060--Hb_000362_200 Hb_001534_120 Hb_001534_120 Hb_001512_060--Hb_001534_120 Hb_007477_070 Hb_007477_070 Hb_001512_060--Hb_007477_070 Hb_007154_020 Hb_007154_020 Hb_001512_060--Hb_007154_020 Hb_028995_040 Hb_028995_040 Hb_001552_020--Hb_028995_040 Hb_029866_090 Hb_029866_090 Hb_001552_020--Hb_029866_090 Hb_002739_100 Hb_002739_100 Hb_001552_020--Hb_002739_100 Hb_000656_400 Hb_000656_400 Hb_001552_020--Hb_000656_400 Hb_002256_030 Hb_002256_030 Hb_001552_020--Hb_002256_030 Hb_005993_040 Hb_005993_040 Hb_002928_130--Hb_005993_040 Hb_000015_080 Hb_000015_080 Hb_002928_130--Hb_000015_080 Hb_002928_130--Hb_002232_440 Hb_000392_440 Hb_000392_440 Hb_002928_130--Hb_000392_440 Hb_000331_080 Hb_000331_080 Hb_002928_130--Hb_000331_080 Hb_000016_250 Hb_000016_250 Hb_000096_070--Hb_000016_250 Hb_000034_100 Hb_000034_100 Hb_000096_070--Hb_000034_100 Hb_002518_280 Hb_002518_280 Hb_000096_070--Hb_002518_280 Hb_003058_190 Hb_003058_190 Hb_000096_070--Hb_003058_190 Hb_000563_320 Hb_000563_320 Hb_000096_070--Hb_000563_320 Hb_002248_080 Hb_002248_080 Hb_000096_070--Hb_002248_080 Hb_002027_250--Hb_002888_030 Hb_002044_080 Hb_002044_080 Hb_002027_250--Hb_002044_080 Hb_002027_250--Hb_001552_020 Hb_002027_250--Hb_000096_070 Hb_000453_170 Hb_000453_170 Hb_002027_250--Hb_000453_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.7743 7.64014 7.85853 5.38413 16.2047 9.297
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.1078 17.0844 11.2513 7.75154 5.6152

CAGE analysis