Hb_002349_040

Information

Type -
Description -
Location Contig2349: 43386-49343
Sequence    

Annotation

kegg
ID pmum:103332388
description RNA pseudouridine synthase 5
nr
ID XP_012086507.1
description PREDICTED: RNA pseudouridine synthase 5 [Jatropha curcas]
swissprot
ID Q5M721
description RNA pseudouridine synthase 5 OS=Arabidopsis thaliana GN=At3g52260 PE=2 SV=2
trembl
ID A0A067K0H9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23951 PE=4 SV=1
Gene Ontology
ID GO:0003723
description rna pseudouridine synthase 5 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24601: 43483-48023 , PASA_asmbl_24602: 43497-49183 , PASA_asmbl_24603: 45824-46005 , PASA_asmbl_24604: 48024-49366
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002349_040 0.0 - - PREDICTED: RNA pseudouridine synthase 5 [Jatropha curcas]
2 Hb_001124_120 0.0763294965 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
3 Hb_150360_030 0.0813215135 - - PREDICTED: F-box/WD-40 repeat-containing protein At3g52030-like [Jatropha curcas]
4 Hb_001221_320 0.088615472 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
5 Hb_000109_090 0.0903038121 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
6 Hb_000053_130 0.0905261335 - - PREDICTED: uncharacterized protein At1g26090, chloroplastic [Jatropha curcas]
7 Hb_004310_130 0.093790498 - - PREDICTED: uncharacterized protein LOC105643225 [Jatropha curcas]
8 Hb_001635_170 0.0958373969 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
9 Hb_000174_110 0.0970756305 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
10 Hb_001404_100 0.098795951 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K [Gossypium raimondii]
11 Hb_008686_080 0.0999631595 - - PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Jatropha curcas]
12 Hb_003687_230 0.1000959431 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
13 Hb_054865_120 0.1004621881 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
14 Hb_002311_180 0.1014333746 - - drought-responsive family protein [Populus trichocarpa]
15 Hb_001936_080 0.1016856173 - - PREDICTED: RNA-binding protein 48-like [Jatropha curcas]
16 Hb_000699_130 0.1017183775 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002045_040 0.1017391433 - - PREDICTED: protein OSB2, chloroplastic-like isoform X1 [Jatropha curcas]
18 Hb_002233_150 0.1017773882 - - PREDICTED: uncharacterized protein LOC105633093 [Jatropha curcas]
19 Hb_003749_010 0.1025604943 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005288_190 0.1030247306 - - PREDICTED: exportin-4 [Jatropha curcas]

Gene co-expression network

sample Hb_002349_040 Hb_002349_040 Hb_001124_120 Hb_001124_120 Hb_002349_040--Hb_001124_120 Hb_150360_030 Hb_150360_030 Hb_002349_040--Hb_150360_030 Hb_001221_320 Hb_001221_320 Hb_002349_040--Hb_001221_320 Hb_000109_090 Hb_000109_090 Hb_002349_040--Hb_000109_090 Hb_000053_130 Hb_000053_130 Hb_002349_040--Hb_000053_130 Hb_004310_130 Hb_004310_130 Hb_002349_040--Hb_004310_130 Hb_000085_060 Hb_000085_060 Hb_001124_120--Hb_000085_060 Hb_001124_120--Hb_150360_030 Hb_000699_130 Hb_000699_130 Hb_001124_120--Hb_000699_130 Hb_031939_010 Hb_031939_010 Hb_001124_120--Hb_031939_010 Hb_007218_080 Hb_007218_080 Hb_001124_120--Hb_007218_080 Hb_150360_030--Hb_004310_130 Hb_150360_030--Hb_007218_080 Hb_150360_030--Hb_000053_130 Hb_001635_170 Hb_001635_170 Hb_150360_030--Hb_001635_170 Hb_001369_180 Hb_001369_180 Hb_150360_030--Hb_001369_180 Hb_000076_120 Hb_000076_120 Hb_150360_030--Hb_000076_120 Hb_003544_020 Hb_003544_020 Hb_001221_320--Hb_003544_020 Hb_002811_260 Hb_002811_260 Hb_001221_320--Hb_002811_260 Hb_005773_060 Hb_005773_060 Hb_001221_320--Hb_005773_060 Hb_008686_080 Hb_008686_080 Hb_001221_320--Hb_008686_080 Hb_001454_400 Hb_001454_400 Hb_001221_320--Hb_001454_400 Hb_000853_170 Hb_000853_170 Hb_000109_090--Hb_000853_170 Hb_010921_010 Hb_010921_010 Hb_000109_090--Hb_010921_010 Hb_003398_130 Hb_003398_130 Hb_000109_090--Hb_003398_130 Hb_003126_080 Hb_003126_080 Hb_000109_090--Hb_003126_080 Hb_002043_190 Hb_002043_190 Hb_000109_090--Hb_002043_190 Hb_005993_040 Hb_005993_040 Hb_000109_090--Hb_005993_040 Hb_000053_130--Hb_000076_120 Hb_000058_100 Hb_000058_100 Hb_000053_130--Hb_000058_100 Hb_054865_120 Hb_054865_120 Hb_000053_130--Hb_054865_120 Hb_000299_040 Hb_000299_040 Hb_000053_130--Hb_000299_040 Hb_000094_300 Hb_000094_300 Hb_000053_130--Hb_000094_300 Hb_004310_130--Hb_007218_080 Hb_004310_130--Hb_001369_180 Hb_000086_380 Hb_000086_380 Hb_004310_130--Hb_000086_380 Hb_004310_130--Hb_001635_170 Hb_000059_330 Hb_000059_330 Hb_004310_130--Hb_000059_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.9187 5.5578 11.1459 6.23812 15.2666 11.2879
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.2581 12.1258 6.96189 6.94311 4.67145

CAGE analysis