Hb_002349_050

Information

Type transcription factor
Description TF Family: MYB
Location Contig2349: 49572-57962
Sequence    

Annotation

kegg
ID pop:POPTR_0010s22670g
description POPTRDRAFT_567580; hypothetical protein
nr
ID XP_012086506.1
description PREDICTED: uncharacterized protein LOC105645502 [Jatropha curcas]
swissprot
ID Q60974
description Nuclear receptor corepressor 1 OS=Mus musculus GN=Ncor1 PE=1 SV=1
trembl
ID A0A067K1T6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23950 PE=4 SV=1
Gene Ontology
ID GO:0005634
description myb family transcription factor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24605: 49633-57943 , PASA_asmbl_24606: 55920-56177 , PASA_asmbl_24607: 57944-58376
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002349_050 0.0 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105645502 [Jatropha curcas]
2 Hb_015475_020 0.0573026304 - - importin beta-1, putative [Ricinus communis]
3 Hb_015026_050 0.0789749225 - - XPA-binding protein, putative [Ricinus communis]
4 Hb_000813_100 0.081628831 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
5 Hb_133047_010 0.0840817388 - - xanthine dehydrogenase, putative [Ricinus communis]
6 Hb_001221_160 0.0844045391 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
7 Hb_001946_300 0.0856344284 - - PREDICTED: F-box protein At-B [Jatropha curcas]
8 Hb_000320_380 0.0877563112 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
9 Hb_000313_340 0.0882475094 - - DNA repair protein xp-E, putative [Ricinus communis]
10 Hb_161072_030 0.0883758881 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77405 [Jatropha curcas]
11 Hb_003858_090 0.0886130714 - - Filamin-A-interacting protein, putative [Ricinus communis]
12 Hb_000363_130 0.0890006749 - - PREDICTED: FRIGIDA-like protein 1 [Jatropha curcas]
13 Hb_000359_270 0.0896105914 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_147737_010 0.0928820805 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
15 Hb_034243_020 0.093056692 - - PREDICTED: elongator complex protein 1 isoform X1 [Jatropha curcas]
16 Hb_002066_080 0.0937884463 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
17 Hb_000753_100 0.0945719326 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105640677 isoform X1 [Jatropha curcas]
18 Hb_004543_030 0.0950730703 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
19 Hb_001080_270 0.0956715465 - - PREDICTED: NF-kappa-B-activating protein [Jatropha curcas]
20 Hb_000640_200 0.0962047934 - - hypothetical protein RCOM_1346600 [Ricinus communis]

Gene co-expression network

sample Hb_002349_050 Hb_002349_050 Hb_015475_020 Hb_015475_020 Hb_002349_050--Hb_015475_020 Hb_015026_050 Hb_015026_050 Hb_002349_050--Hb_015026_050 Hb_000813_100 Hb_000813_100 Hb_002349_050--Hb_000813_100 Hb_133047_010 Hb_133047_010 Hb_002349_050--Hb_133047_010 Hb_001221_160 Hb_001221_160 Hb_002349_050--Hb_001221_160 Hb_001946_300 Hb_001946_300 Hb_002349_050--Hb_001946_300 Hb_015475_020--Hb_001221_160 Hb_003858_090 Hb_003858_090 Hb_015475_020--Hb_003858_090 Hb_015475_020--Hb_133047_010 Hb_001080_270 Hb_001080_270 Hb_015475_020--Hb_001080_270 Hb_000753_100 Hb_000753_100 Hb_015475_020--Hb_000753_100 Hb_000320_380 Hb_000320_380 Hb_015026_050--Hb_000320_380 Hb_147737_010 Hb_147737_010 Hb_015026_050--Hb_147737_010 Hb_002221_050 Hb_002221_050 Hb_015026_050--Hb_002221_050 Hb_000329_130 Hb_000329_130 Hb_015026_050--Hb_000329_130 Hb_007885_070 Hb_007885_070 Hb_015026_050--Hb_007885_070 Hb_003847_120 Hb_003847_120 Hb_015026_050--Hb_003847_120 Hb_000594_020 Hb_000594_020 Hb_000813_100--Hb_000594_020 Hb_000997_030 Hb_000997_030 Hb_000813_100--Hb_000997_030 Hb_004899_070 Hb_004899_070 Hb_000813_100--Hb_004899_070 Hb_000813_100--Hb_147737_010 Hb_000002_440 Hb_000002_440 Hb_000813_100--Hb_000002_440 Hb_000813_100--Hb_001946_300 Hb_111985_080 Hb_111985_080 Hb_133047_010--Hb_111985_080 Hb_004884_010 Hb_004884_010 Hb_133047_010--Hb_004884_010 Hb_002392_030 Hb_002392_030 Hb_133047_010--Hb_002392_030 Hb_034243_020 Hb_034243_020 Hb_133047_010--Hb_034243_020 Hb_002301_080 Hb_002301_080 Hb_133047_010--Hb_002301_080 Hb_148909_030 Hb_148909_030 Hb_133047_010--Hb_148909_030 Hb_004659_080 Hb_004659_080 Hb_001221_160--Hb_004659_080 Hb_001221_160--Hb_003858_090 Hb_003710_040 Hb_003710_040 Hb_001221_160--Hb_003710_040 Hb_001221_160--Hb_133047_010 Hb_001221_160--Hb_004899_070 Hb_000363_130 Hb_000363_130 Hb_001946_300--Hb_000363_130 Hb_000313_340 Hb_000313_340 Hb_001946_300--Hb_000313_340 Hb_140049_020 Hb_140049_020 Hb_001946_300--Hb_140049_020 Hb_001946_300--Hb_147737_010 Hb_032202_240 Hb_032202_240 Hb_001946_300--Hb_032202_240 Hb_000504_160 Hb_000504_160 Hb_001946_300--Hb_000504_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
53.0519 54.1223 14.5265 18.0874 48.5833 50.7934
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.7056 10.5582 20.0712 15.6426 22.7512

CAGE analysis