Hb_002352_010

Information

Type -
Description -
Location Contig2352: 56671-57878
Sequence    

Annotation

kegg
ID rcu:RCOM_0616150
description Rop guanine nucleotide exchange factor, putative
nr
ID XP_012084870.1
description PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
swissprot
ID Q93ZY2
description Rop guanine nucleotide exchange factor 1 OS=Arabidopsis thaliana GN=ROPGEF1 PE=1 SV=2
trembl
ID A0A067JT44
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20943 PE=4 SV=1
Gene Ontology
ID GO:0016324
description rop guanine nucleotide exchange factor 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24633: 56688-58068
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002352_010 0.0 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
2 Hb_001473_130 0.0718836007 - - PREDICTED: ubiquinone biosynthesis monooxygenase COQ6 [Jatropha curcas]
3 Hb_002527_070 0.0802677742 - - axonemal dynein light chain, putative [Ricinus communis]
4 Hb_000427_110 0.0823946496 - - PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Jatropha curcas]
5 Hb_001677_110 0.0879737817 - - Protein YIPF1, putative [Ricinus communis]
6 Hb_002326_030 0.0912536937 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
7 Hb_012522_030 0.0914038868 - - ankyrin repeat-containing protein, putative [Ricinus communis]
8 Hb_007047_010 0.0928109129 - - PREDICTED: expansin-A13 [Jatropha curcas]
9 Hb_084849_020 0.094213138 - - ARF GTPase activator, putative [Ricinus communis]
10 Hb_000048_050 0.0942508165 - - PREDICTED: F-box/kelch-repeat protein At1g22040-like [Jatropha curcas]
11 Hb_023226_090 0.0958999151 - - PREDICTED: glycolipid transfer protein [Jatropha curcas]
12 Hb_000032_220 0.0986983996 - - PREDICTED: abscisic acid receptor PYL8-like isoform X1 [Jatropha curcas]
13 Hb_001711_030 0.0990625022 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
14 Hb_008311_010 0.1023312981 - - hypothetical protein CARUB_v10003781mg [Capsella rubella]
15 Hb_002282_020 0.1053575811 - - PREDICTED: uncharacterized protein LOC105629828 [Jatropha curcas]
16 Hb_001427_120 0.105641388 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
17 Hb_000983_100 0.1064196866 - - PREDICTED: AP-4 complex subunit mu isoform X1 [Vitis vinifera]
18 Hb_071736_020 0.1075212162 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
19 Hb_002025_320 0.1076200404 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
20 Hb_002749_100 0.1078872445 - - PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002352_010 Hb_002352_010 Hb_001473_130 Hb_001473_130 Hb_002352_010--Hb_001473_130 Hb_002527_070 Hb_002527_070 Hb_002352_010--Hb_002527_070 Hb_000427_110 Hb_000427_110 Hb_002352_010--Hb_000427_110 Hb_001677_110 Hb_001677_110 Hb_002352_010--Hb_001677_110 Hb_002326_030 Hb_002326_030 Hb_002352_010--Hb_002326_030 Hb_012522_030 Hb_012522_030 Hb_002352_010--Hb_012522_030 Hb_002025_320 Hb_002025_320 Hb_001473_130--Hb_002025_320 Hb_000983_100 Hb_000983_100 Hb_001473_130--Hb_000983_100 Hb_001473_130--Hb_002326_030 Hb_001473_130--Hb_002527_070 Hb_001473_130--Hb_000427_110 Hb_001427_120 Hb_001427_120 Hb_002527_070--Hb_001427_120 Hb_000861_040 Hb_000861_040 Hb_002527_070--Hb_000861_040 Hb_001711_030 Hb_001711_030 Hb_002527_070--Hb_001711_030 Hb_003408_030 Hb_003408_030 Hb_002527_070--Hb_003408_030 Hb_002527_070--Hb_000983_100 Hb_001191_100 Hb_001191_100 Hb_000427_110--Hb_001191_100 Hb_000427_110--Hb_002326_030 Hb_001606_070 Hb_001606_070 Hb_000427_110--Hb_001606_070 Hb_026988_020 Hb_026988_020 Hb_000427_110--Hb_026988_020 Hb_001677_110--Hb_026988_020 Hb_001677_110--Hb_001473_130 Hb_000001_050 Hb_000001_050 Hb_001677_110--Hb_000001_050 Hb_008311_010 Hb_008311_010 Hb_001677_110--Hb_008311_010 Hb_002716_070 Hb_002716_070 Hb_001677_110--Hb_002716_070 Hb_005455_070 Hb_005455_070 Hb_002326_030--Hb_005455_070 Hb_002326_030--Hb_000861_040 Hb_002326_030--Hb_012522_030 Hb_000173_170 Hb_000173_170 Hb_002326_030--Hb_000173_170 Hb_007229_060 Hb_007229_060 Hb_002326_030--Hb_007229_060 Hb_002387_060 Hb_002387_060 Hb_012522_030--Hb_002387_060 Hb_002291_030 Hb_002291_030 Hb_012522_030--Hb_002291_030 Hb_012522_030--Hb_001711_030 Hb_000419_040 Hb_000419_040 Hb_012522_030--Hb_000419_040 Hb_002282_020 Hb_002282_020 Hb_012522_030--Hb_002282_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
85.1443 11.3234 12.155 27.2826 50.7333 117.67
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
163.873 119.493 169.387 21.2291 7.46921

CAGE analysis