Hb_002357_040

Information

Type -
Description -
Location Contig2357: 58179-61631
Sequence    

Annotation

kegg
ID rcu:RCOM_1129630
description caspase, putative
nr
ID AAD13216.1
description latex-abundant protein [Hevea brasiliensis]
swissprot
ID O64517
description Metacaspase-4 OS=Arabidopsis thaliana GN=AMC4 PE=1 SV=1
trembl
ID Q9ZSP8
description Latex-abundant protein OS=Hevea brasiliensis GN=LAR PE=2 SV=1
Gene Ontology
ID GO:0004197
description latex abundant family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24641: 58176-61713
cDNA
(Sanger)
(ID:Location)		 021_D05.ab1: 58275-60645 , 024_P24.ab1: 58240-60544 , 027_K02.ab1: 58263-58760 , 032_B06.ab1: 58275-60639 , 035_D04.ab1: 58269-60614 , 039_D15.ab1: 58241-60582

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002357_040 0.0 - - latex-abundant protein [Hevea brasiliensis]
2 Hb_000025_480 0.0744066622 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X1 [Jatropha curcas]
3 Hb_001981_090 0.0786877515 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
4 Hb_001366_220 0.0790016374 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000805_090 0.0801595016 - - hypothetical protein POPTR_0009s03890g [Populus trichocarpa]
6 Hb_000696_110 0.083883653 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
7 Hb_000387_080 0.0854957658 - - PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
8 Hb_002025_320 0.0874692995 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
9 Hb_001473_130 0.0880894688 - - PREDICTED: ubiquinone biosynthesis monooxygenase COQ6 [Jatropha curcas]
10 Hb_005779_100 0.0881609677 - - DNAJ [Theobroma cacao]
11 Hb_000983_100 0.0900604191 - - PREDICTED: AP-4 complex subunit mu isoform X1 [Vitis vinifera]
12 Hb_006602_020 0.0914909862 - - unknown [Medicago truncatula]
13 Hb_011174_070 0.0927417897 - - PREDICTED: pentatricopeptide repeat-containing protein At5g06540-like [Jatropha curcas]
14 Hb_003638_030 0.0938395907 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
15 Hb_000152_140 0.0940616905 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
16 Hb_000538_210 0.0972581306 - - ATP binding protein, putative [Ricinus communis]
17 Hb_000700_090 0.0974915898 - - protein with unknown function [Ricinus communis]
18 Hb_007760_030 0.0979335078 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
19 Hb_001999_060 0.0987747818 - - hypothetical protein POPTR_0009s05000g [Populus trichocarpa]
20 Hb_002154_050 0.1014494192 - - RNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002357_040 Hb_002357_040 Hb_000025_480 Hb_000025_480 Hb_002357_040--Hb_000025_480 Hb_001981_090 Hb_001981_090 Hb_002357_040--Hb_001981_090 Hb_001366_220 Hb_001366_220 Hb_002357_040--Hb_001366_220 Hb_000805_090 Hb_000805_090 Hb_002357_040--Hb_000805_090 Hb_000696_110 Hb_000696_110 Hb_002357_040--Hb_000696_110 Hb_000387_080 Hb_000387_080 Hb_002357_040--Hb_000387_080 Hb_007760_030 Hb_007760_030 Hb_000025_480--Hb_007760_030 Hb_098993_010 Hb_098993_010 Hb_000025_480--Hb_098993_010 Hb_011174_070 Hb_011174_070 Hb_000025_480--Hb_011174_070 Hb_000538_210 Hb_000538_210 Hb_000025_480--Hb_000538_210 Hb_000110_160 Hb_000110_160 Hb_000025_480--Hb_000110_160 Hb_005357_150 Hb_005357_150 Hb_001981_090--Hb_005357_150 Hb_001981_090--Hb_001366_220 Hb_000809_040 Hb_000809_040 Hb_001981_090--Hb_000809_040 Hb_000983_100 Hb_000983_100 Hb_001981_090--Hb_000983_100 Hb_001981_090--Hb_000805_090 Hb_001366_220--Hb_000809_040 Hb_000313_380 Hb_000313_380 Hb_001366_220--Hb_000313_380 Hb_001366_220--Hb_000387_080 Hb_000085_310 Hb_000085_310 Hb_001366_220--Hb_000085_310 Hb_003638_030 Hb_003638_030 Hb_000805_090--Hb_003638_030 Hb_000805_090--Hb_000809_040 Hb_000805_090--Hb_011174_070 Hb_003861_080 Hb_003861_080 Hb_000805_090--Hb_003861_080 Hb_000152_140 Hb_000152_140 Hb_000696_110--Hb_000152_140 Hb_000057_060 Hb_000057_060 Hb_000696_110--Hb_000057_060 Hb_000599_120 Hb_000599_120 Hb_000696_110--Hb_000599_120 Hb_000696_110--Hb_000538_210 Hb_010174_130 Hb_010174_130 Hb_000696_110--Hb_010174_130 Hb_003057_120 Hb_003057_120 Hb_000387_080--Hb_003057_120 Hb_000387_080--Hb_000057_060 Hb_010174_120 Hb_010174_120 Hb_000387_080--Hb_010174_120 Hb_000387_080--Hb_011174_070 Hb_006602_020 Hb_006602_020 Hb_000387_080--Hb_006602_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
937.715 121.121 57.759 151.125 886.171 1167.63
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
944.086 805.408 1417.81 374.274 90.6659

CAGE analysis